Hb_020805_180

Information

Type -
Description -
Location Contig20805: 127701-141524
Sequence    

Annotation

kegg
ID rcu:RCOM_1601620
description calcium ion binding protein, putative
nr
ID XP_012073633.1
description PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
swissprot
ID B3LF48
description EH domain-containing protein 2 OS=Arabidopsis thaliana GN=EHD2 PE=1 SV=1
trembl
ID A0A067KWZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08066 PE=4 SV=1
Gene Ontology
ID GO:0005509
description low quality protein: epidermal growth factor receptor substrate 15-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21538: 141180-141364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_180 0.0 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
2 Hb_080147_050 0.0651657818 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
3 Hb_000321_090 0.0666043953 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
4 Hb_002851_010 0.0691762769 - - sugar transporter, putative [Ricinus communis]
5 Hb_000649_060 0.069733858 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
6 Hb_000157_070 0.0734811128 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
7 Hb_002027_190 0.076745613 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
8 Hb_000152_700 0.081120196 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
9 Hb_135959_010 0.0815455818 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
10 Hb_000342_050 0.0823323646 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
11 Hb_004450_070 0.0826879923 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
12 Hb_001587_030 0.0864641582 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
13 Hb_000890_070 0.0885751221 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
14 Hb_000834_230 0.088684652 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
15 Hb_004837_280 0.0909442868 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
16 Hb_000049_250 0.0912668607 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
17 Hb_003058_200 0.0935488932 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
18 Hb_001226_130 0.0964742175 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
19 Hb_000787_200 0.0966964973 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001322_180 0.0971473014 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_180 Hb_020805_180 Hb_080147_050 Hb_080147_050 Hb_020805_180--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_020805_180--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_020805_180--Hb_002851_010 Hb_000649_060 Hb_000649_060 Hb_020805_180--Hb_000649_060 Hb_000157_070 Hb_000157_070 Hb_020805_180--Hb_000157_070 Hb_002027_190 Hb_002027_190 Hb_020805_180--Hb_002027_190 Hb_080147_050--Hb_000321_090 Hb_000834_230 Hb_000834_230 Hb_080147_050--Hb_000834_230 Hb_000787_200 Hb_000787_200 Hb_080147_050--Hb_000787_200 Hb_158845_060 Hb_158845_060 Hb_080147_050--Hb_158845_060 Hb_007245_020 Hb_007245_020 Hb_080147_050--Hb_007245_020 Hb_000080_110 Hb_000080_110 Hb_000321_090--Hb_000080_110 Hb_000321_090--Hb_002027_190 Hb_000049_250 Hb_000049_250 Hb_000321_090--Hb_000049_250 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002851_010--Hb_002027_190 Hb_002851_010--Hb_000157_070 Hb_002851_010--Hb_000649_060 Hb_003058_200 Hb_003058_200 Hb_002851_010--Hb_003058_200 Hb_001587_030 Hb_001587_030 Hb_000649_060--Hb_001587_030 Hb_001226_130 Hb_001226_130 Hb_000649_060--Hb_001226_130 Hb_000890_070 Hb_000890_070 Hb_000649_060--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000649_060--Hb_004450_070 Hb_000152_700 Hb_000152_700 Hb_000649_060--Hb_000152_700 Hb_000157_070--Hb_135959_010 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050 Hb_002027_190--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_002027_190--Hb_033799_010 Hb_007747_170 Hb_007747_170 Hb_002027_190--Hb_007747_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.72107 6.08806 4.39783 7.40303 3.6401 3.50184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03145 2.36448 2.27648 12.2529 7.80345

CAGE analysis