Hb_002851_010

Information

Type -
Description -
Location Contig2851: 17080-25991
Sequence    

Annotation

kegg
ID rcu:RCOM_1594440
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002510395.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q9FRL3
description Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1
trembl
ID B9R7V2
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1594440 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29850: 16960-25989 , PASA_asmbl_29851: 17499-17735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002851_010 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_135959_010 0.0547490636 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
3 Hb_002027_190 0.0667953381 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
4 Hb_020805_180 0.0691762769 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
5 Hb_000157_070 0.0787564747 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
6 Hb_000649_060 0.0802296672 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
7 Hb_003058_200 0.0862550544 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
8 Hb_004450_070 0.0871147464 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
9 Hb_000674_010 0.0880427527 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
10 Hb_000321_090 0.0910128841 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
11 Hb_021297_020 0.09296557 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_000152_700 0.0954583003 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
13 Hb_075315_010 0.0972507602 - - ornithine aminotransferase [Camellia sinensis]
14 Hb_007747_170 0.0973002492 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
15 Hb_003125_180 0.0976732714 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
16 Hb_001587_030 0.0987775051 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
17 Hb_011032_010 0.0994290219 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_000080_110 0.1006529345 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
19 Hb_069619_010 0.1008856082 - - Aspartic proteinase precursor, putative [Ricinus communis]
20 Hb_000890_070 0.104038659 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002851_010 Hb_002851_010 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_002851_010--Hb_020805_180 Hb_000157_070 Hb_000157_070 Hb_002851_010--Hb_000157_070 Hb_000649_060 Hb_000649_060 Hb_002851_010--Hb_000649_060 Hb_003058_200 Hb_003058_200 Hb_002851_010--Hb_003058_200 Hb_135959_010--Hb_000157_070 Hb_135959_010--Hb_020805_180 Hb_158845_060 Hb_158845_060 Hb_135959_010--Hb_158845_060 Hb_135959_010--Hb_002027_190 Hb_007747_170 Hb_007747_170 Hb_135959_010--Hb_007747_170 Hb_000321_090 Hb_000321_090 Hb_002027_190--Hb_000321_090 Hb_000080_110 Hb_000080_110 Hb_002027_190--Hb_000080_110 Hb_002027_190--Hb_020805_180 Hb_033799_010 Hb_033799_010 Hb_002027_190--Hb_033799_010 Hb_002027_190--Hb_007747_170 Hb_080147_050 Hb_080147_050 Hb_020805_180--Hb_080147_050 Hb_020805_180--Hb_000321_090 Hb_020805_180--Hb_000649_060 Hb_020805_180--Hb_000157_070 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050 Hb_001587_030 Hb_001587_030 Hb_000649_060--Hb_001587_030 Hb_001226_130 Hb_001226_130 Hb_000649_060--Hb_001226_130 Hb_000890_070 Hb_000890_070 Hb_000649_060--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000649_060--Hb_004450_070 Hb_000152_700 Hb_000152_700 Hb_000649_060--Hb_000152_700 Hb_002072_010 Hb_002072_010 Hb_003058_200--Hb_002072_010 Hb_000674_010 Hb_000674_010 Hb_003058_200--Hb_000674_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_003125_180 Hb_003125_180 Hb_003058_200--Hb_003125_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94105 7.98089 4.25547 10.4107 4.67719 4.71239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80457 2.20665 2.78358 13.8493 7.99875

CAGE analysis