Hb_021297_020

Information

Type -
Description -
Location Contig21297: 15062-25740
Sequence    

Annotation

kegg
ID rcu:RCOM_0623350
description Cyclic nucleotide-gated ion channel, putative
nr
ID XP_002529385.1
description Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
swissprot
ID Q8RWS9
description Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1
trembl
ID B9STR6
description Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_0623350 PE=4 SV=1
Gene Ontology
ID GO:0005249
description probable cyclic nucleotide-gated ion channel 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22029: 15076-25717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021297_020 0.0 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
2 Hb_000649_060 0.0776016556 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
3 Hb_027445_020 0.0820233315 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
4 Hb_000674_010 0.0835845643 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
5 Hb_000701_030 0.0846726959 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
6 Hb_003058_200 0.0859939102 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
7 Hb_001226_130 0.0905229024 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
8 Hb_003340_010 0.092050725 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
9 Hb_000890_070 0.0924542497 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
10 Hb_001210_040 0.0924996442 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
11 Hb_002851_010 0.09296557 - - sugar transporter, putative [Ricinus communis]
12 Hb_000237_040 0.0936256671 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
13 Hb_055062_040 0.0990796659 - - ceramidase, putative [Ricinus communis]
14 Hb_002072_010 0.1003598972 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001366_270 0.10137657 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_001587_030 0.1016774698 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
17 Hb_000254_070 0.1020265889 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
18 Hb_001511_180 0.1027156679 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
19 Hb_004450_070 0.1029872762 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
20 Hb_020805_180 0.1049846019 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_021297_020 Hb_021297_020 Hb_000649_060 Hb_000649_060 Hb_021297_020--Hb_000649_060 Hb_027445_020 Hb_027445_020 Hb_021297_020--Hb_027445_020 Hb_000674_010 Hb_000674_010 Hb_021297_020--Hb_000674_010 Hb_000701_030 Hb_000701_030 Hb_021297_020--Hb_000701_030 Hb_003058_200 Hb_003058_200 Hb_021297_020--Hb_003058_200 Hb_001226_130 Hb_001226_130 Hb_021297_020--Hb_001226_130 Hb_001587_030 Hb_001587_030 Hb_000649_060--Hb_001587_030 Hb_000649_060--Hb_001226_130 Hb_020805_180 Hb_020805_180 Hb_000649_060--Hb_020805_180 Hb_000890_070 Hb_000890_070 Hb_000649_060--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000649_060--Hb_004450_070 Hb_000152_700 Hb_000152_700 Hb_000649_060--Hb_000152_700 Hb_001369_360 Hb_001369_360 Hb_027445_020--Hb_001369_360 Hb_000237_040 Hb_000237_040 Hb_027445_020--Hb_000237_040 Hb_000976_100 Hb_000976_100 Hb_027445_020--Hb_000976_100 Hb_002874_110 Hb_002874_110 Hb_027445_020--Hb_002874_110 Hb_003097_140 Hb_003097_140 Hb_027445_020--Hb_003097_140 Hb_000237_050 Hb_000237_050 Hb_027445_020--Hb_000237_050 Hb_000674_010--Hb_003058_200 Hb_003125_180 Hb_003125_180 Hb_000674_010--Hb_003125_180 Hb_002072_010 Hb_002072_010 Hb_000674_010--Hb_002072_010 Hb_002851_010 Hb_002851_010 Hb_000674_010--Hb_002851_010 Hb_005000_090 Hb_005000_090 Hb_000674_010--Hb_005000_090 Hb_000265_140 Hb_000265_140 Hb_000701_030--Hb_000265_140 Hb_021576_070 Hb_021576_070 Hb_000701_030--Hb_021576_070 Hb_000494_030 Hb_000494_030 Hb_000701_030--Hb_000494_030 Hb_000254_070 Hb_000254_070 Hb_000701_030--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000701_030--Hb_000003_310 Hb_001097_040 Hb_001097_040 Hb_000701_030--Hb_001097_040 Hb_003058_200--Hb_002072_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_003058_200--Hb_002851_010 Hb_003058_200--Hb_003125_180 Hb_001226_130--Hb_001587_030 Hb_001811_170 Hb_001811_170 Hb_001226_130--Hb_001811_170 Hb_000342_050 Hb_000342_050 Hb_001226_130--Hb_000342_050 Hb_004837_280 Hb_004837_280 Hb_001226_130--Hb_004837_280 Hb_001226_130--Hb_000152_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.78338 25.7738 18.6318 51.5005 15.658 23.8867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.7544 8.30127 13.1331 46.7363 46.9587

CAGE analysis