Hb_027445_020

Information

Type -
Description -
Location Contig27445: 7702-12023
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35320g
description POPTRDRAFT_1068899; GPI transamidase component family protein
nr
ID XP_012072078.1
description PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
swissprot
ID O43292
description Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo sapiens GN=GPAA1 PE=1 SV=3
trembl
ID A0A067LGE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10258 PE=4 SV=1
Gene Ontology
ID GO:0042765
description glycosylphosphatidylinositol anchor attachment 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28731: 7842-8088 , PASA_asmbl_28732: 8461-8910 , PASA_asmbl_28733: 9209-11953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027445_020 0.0 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
2 Hb_001369_360 0.0510249144 - - embryo yellow protein, partial [Manihot esculenta]
3 Hb_000237_040 0.0648822196 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
4 Hb_000976_100 0.0683360419 - - eukaryotic translation elongation factor, putative [Ricinus communis]
5 Hb_002874_110 0.069393587 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
6 Hb_003097_140 0.0731295778 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
7 Hb_000237_050 0.0770892747 - - CP2 [Hevea brasiliensis]
8 Hb_003340_010 0.0811519593 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
9 Hb_103684_010 0.0816189818 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
10 Hb_000649_060 0.0819437487 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
11 Hb_021297_020 0.0820233315 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_003994_220 0.0868192891 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
13 Hb_001587_030 0.0870969888 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
14 Hb_000803_320 0.0871462571 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
15 Hb_000701_030 0.0907089779 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
16 Hb_001226_130 0.0909622536 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_000890_070 0.0914127337 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
18 Hb_003086_170 0.091790746 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
19 Hb_000363_040 0.0920743922 - - Protein transport protein Sec24A, putative [Ricinus communis]
20 Hb_007416_210 0.0922957288 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]

Gene co-expression network

sample Hb_027445_020 Hb_027445_020 Hb_001369_360 Hb_001369_360 Hb_027445_020--Hb_001369_360 Hb_000237_040 Hb_000237_040 Hb_027445_020--Hb_000237_040 Hb_000976_100 Hb_000976_100 Hb_027445_020--Hb_000976_100 Hb_002874_110 Hb_002874_110 Hb_027445_020--Hb_002874_110 Hb_003097_140 Hb_003097_140 Hb_027445_020--Hb_003097_140 Hb_000237_050 Hb_000237_050 Hb_027445_020--Hb_000237_050 Hb_001369_360--Hb_000976_100 Hb_001369_360--Hb_003097_140 Hb_001369_360--Hb_000237_040 Hb_103684_010 Hb_103684_010 Hb_001369_360--Hb_103684_010 Hb_001821_150 Hb_001821_150 Hb_001369_360--Hb_001821_150 Hb_000237_040--Hb_000976_100 Hb_126976_010 Hb_126976_010 Hb_000237_040--Hb_126976_010 Hb_000237_040--Hb_000237_050 Hb_055062_040 Hb_055062_040 Hb_000237_040--Hb_055062_040 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_000363_040 Hb_000363_040 Hb_000976_100--Hb_000363_040 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_000237_050--Hb_103684_010 Hb_004450_070 Hb_004450_070 Hb_000237_050--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_000237_050--Hb_019280_010 Hb_000237_050--Hb_003097_140 Hb_001437_190 Hb_001437_190 Hb_000237_050--Hb_001437_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94878 4.75642 3.76803 10.3812 4.55404 4.49088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72754 2.75945 4.22664 8.37485 9.2386

CAGE analysis