Hb_000928_190

Information

Type -
Description -
Location Contig928: 160681-182762
Sequence    

Annotation

kegg
ID rcu:RCOM_1516860
description AMP dependent ligase, putative (EC:5.1.1.11)
nr
ID XP_012070289.1
description PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
swissprot
ID F4K1G2
description Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana GN=At5g35930 PE=2 SV=1
trembl
ID B9SDD9
description AMP dependent ligase, putative OS=Ricinus communis GN=RCOM_1516860 PE=4 SV=1
Gene Ontology
ID GO:0016788
description acyl-activating enzyme 19 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62762: 161399-164432 , PASA_asmbl_62763: 161914-162045 , PASA_asmbl_62764: 164725-168135 , PASA_asmbl_62765: 171177-172192 , PASA_asmbl_62766: 174164-175733 , PASA_asmbl_62767: 177457-178191 , PASA_asmbl_62768: 178997-182262 , PASA_asmbl_62769: 182270-182570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_190 0.0 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
2 Hb_033152_070 0.0725695234 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
3 Hb_000258_240 0.0833530637 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_002781_030 0.0855100358 - - protein binding protein, putative [Ricinus communis]
5 Hb_010042_020 0.0858667686 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
6 Hb_001481_150 0.0874099902 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
7 Hb_003988_050 0.0905816768 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
8 Hb_001006_270 0.0915506725 - - peptide transporter, putative [Ricinus communis]
9 Hb_005914_140 0.0952152046 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
10 Hb_000800_090 0.0964510321 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
11 Hb_132880_040 0.0966931808 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
12 Hb_004607_070 0.096795758 - - integral membrane protein, putative [Ricinus communis]
13 Hb_000046_170 0.097976043 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
14 Hb_000025_190 0.1008187723 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
15 Hb_004881_030 0.1043756503 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
16 Hb_003052_180 0.1057072122 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
17 Hb_000165_080 0.1061885105 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
18 Hb_012678_020 0.1066635228 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
19 Hb_002902_130 0.1066638908 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
20 Hb_000237_050 0.1074634656 - - CP2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000928_190 Hb_000928_190 Hb_033152_070 Hb_033152_070 Hb_000928_190--Hb_033152_070 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_000928_190--Hb_010042_020 Hb_001481_150 Hb_001481_150 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_033152_070--Hb_010042_020 Hb_003207_020 Hb_003207_020 Hb_033152_070--Hb_003207_020 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_000258_240--Hb_002781_030 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_000359_090 Hb_000359_090 Hb_002781_030--Hb_000359_090 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_002781_030--Hb_001481_150 Hb_010042_020--Hb_003207_020 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_010042_020--Hb_004525_040 Hb_000107_110 Hb_000107_110 Hb_010042_020--Hb_000107_110 Hb_004480_020 Hb_004480_020 Hb_001481_150--Hb_004480_020 Hb_001481_150--Hb_033152_070 Hb_001481_150--Hb_004525_040 Hb_019280_020 Hb_019280_020 Hb_001481_150--Hb_019280_020 Hb_001006_270 Hb_001006_270 Hb_001481_150--Hb_001006_270 Hb_000115_150 Hb_000115_150 Hb_003988_050--Hb_000115_150 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_003988_050--Hb_000025_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.631062 1.22127 0.777676 4.40067 0.758678 1.14299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28077 1.25843 1.20076 2.46268 2.02344

CAGE analysis