Hb_000107_110

Information

Type -
Description -
Location Contig107: 84992-92463
Sequence    

Annotation

kegg
ID rcu:RCOM_0341900
description nucleic acid binding protein, putative
nr
ID XP_002523383.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9SKZ1
description Transcription factor Pur-alpha 1 OS=Arabidopsis thaliana GN=PURA1 PE=1 SV=2
trembl
ID B9SBL4
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0341900 PE=4 SV=1
Gene Ontology
ID GO:0005737
description transcription factor pur-alpha 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02139: 84820-92784 , PASA_asmbl_02141: 87724-88153 , PASA_asmbl_02143: 88922-89351 , PASA_asmbl_02145: 87294-87708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_110 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001894_070 0.0699763611 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
3 Hb_004881_030 0.0760591332 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
4 Hb_010042_020 0.0884693515 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
5 Hb_033152_070 0.0902482172 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
6 Hb_001104_130 0.091115786 - - C-14 sterol reductase, putative [Ricinus communis]
7 Hb_003052_180 0.0956597523 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
8 Hb_005701_120 0.1000242791 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
9 Hb_003207_020 0.105540291 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
10 Hb_004525_040 0.1073429786 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
11 Hb_000390_050 0.1079332835 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
12 Hb_000928_190 0.109580279 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
13 Hb_091349_010 0.111521068 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
14 Hb_000671_130 0.1118001156 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
15 Hb_007765_040 0.1128133821 - - Cytosolic enolase isoform 3 [Theobroma cacao]
16 Hb_003529_030 0.1168122797 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
17 Hb_005218_020 0.117047693 - - Uncharacterized protein isoform 3 [Theobroma cacao]
18 Hb_009661_030 0.1170495959 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
19 Hb_002603_050 0.1203069145 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
20 Hb_000417_390 0.1204460163 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]

Gene co-expression network

sample Hb_000107_110 Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_000107_110--Hb_001894_070 Hb_004881_030 Hb_004881_030 Hb_000107_110--Hb_004881_030 Hb_010042_020 Hb_010042_020 Hb_000107_110--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_003052_180 Hb_003052_180 Hb_000107_110--Hb_003052_180 Hb_091349_010 Hb_091349_010 Hb_001894_070--Hb_091349_010 Hb_001894_070--Hb_010042_020 Hb_000671_130 Hb_000671_130 Hb_001894_070--Hb_000671_130 Hb_001894_070--Hb_004881_030 Hb_001894_070--Hb_003052_180 Hb_004881_030--Hb_001104_130 Hb_002603_050 Hb_002603_050 Hb_004881_030--Hb_002603_050 Hb_004881_030--Hb_003052_180 Hb_004881_030--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_004881_030--Hb_000928_190 Hb_010042_020--Hb_033152_070 Hb_003207_020 Hb_003207_020 Hb_010042_020--Hb_003207_020 Hb_010042_020--Hb_000928_190 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_004525_040 Hb_004525_040 Hb_010042_020--Hb_004525_040 Hb_033152_070--Hb_003207_020 Hb_033152_070--Hb_000928_190 Hb_033152_070--Hb_004525_040 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_002226_080 Hb_002226_080 Hb_001104_130--Hb_002226_080 Hb_009661_030 Hb_009661_030 Hb_001104_130--Hb_009661_030 Hb_000014_040 Hb_000014_040 Hb_001104_130--Hb_000014_040 Hb_000004_020 Hb_000004_020 Hb_001104_130--Hb_000004_020 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1755 6.34765 8.41084 34.8262 5.25812 11.1599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.64313 10.0738 8.37579 11.0451 18.9533

CAGE analysis