Hb_091349_010

Information

Type -
Description -
Location Contig91349: 1239-3685
Sequence    

Annotation

kegg
ID egr:104437370
description protein YIPF6-like
nr
ID KCW80928.1
description hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
swissprot
ID Q28CH8
description Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1
trembl
ID A0A059CR63
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02287 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein yipf6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091349_010 0.0 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
2 Hb_000671_130 0.1092618968 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
3 Hb_010577_010 0.110933562 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
4 Hb_000107_110 0.111521068 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_001894_070 0.1199226766 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
6 Hb_033152_070 0.1241611032 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
7 Hb_004881_030 0.1268024349 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
8 Hb_003052_180 0.1332962361 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
9 Hb_000402_130 0.1338031092 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
10 Hb_000683_100 0.1343125951 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
11 Hb_000103_250 0.1364055388 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
12 Hb_003207_020 0.1393152791 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
13 Hb_088327_010 0.1406939326 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
14 Hb_026889_040 0.1444825912 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
15 Hb_000019_180 0.1447558359 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
16 Hb_122636_010 0.1456098989 - - dienelactone hydrolase family protein [Populus trichocarpa]
17 Hb_010042_020 0.1458160234 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
18 Hb_004525_040 0.1476198767 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
19 Hb_005701_120 0.1489783023 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
20 Hb_003529_030 0.150664512 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_091349_010 Hb_091349_010 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_033152_070 Hb_033152_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_122636_010 Hb_122636_010 Hb_000671_130--Hb_122636_010 Hb_003207_020 Hb_003207_020 Hb_000671_130--Hb_003207_020 Hb_000671_130--Hb_033152_070 Hb_000671_130--Hb_000107_110 Hb_048476_060 Hb_048476_060 Hb_000671_130--Hb_048476_060 Hb_001969_020 Hb_001969_020 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_010577_010--Hb_122636_010 Hb_010931_140 Hb_010931_140 Hb_010577_010--Hb_010931_140 Hb_007574_070 Hb_007574_070 Hb_010577_010--Hb_007574_070 Hb_000107_110--Hb_001894_070 Hb_000107_110--Hb_004881_030 Hb_010042_020 Hb_010042_020 Hb_000107_110--Hb_010042_020 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_003052_180 Hb_003052_180 Hb_000107_110--Hb_003052_180 Hb_001894_070--Hb_010042_020 Hb_001894_070--Hb_000671_130 Hb_001894_070--Hb_004881_030 Hb_001894_070--Hb_003052_180 Hb_033152_070--Hb_010042_020 Hb_033152_070--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_033152_070--Hb_000928_190 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_004881_030--Hb_001104_130 Hb_002603_050 Hb_002603_050 Hb_004881_030--Hb_002603_050 Hb_004881_030--Hb_003052_180 Hb_004881_030--Hb_033152_070 Hb_004881_030--Hb_000928_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23828 6.25226 14.1128 83.2585 8.96593 18.5576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1437 20.5258 26.9214 22.6072 30.1234

CAGE analysis