Hb_010577_010

Information

Type -
Description -
Location Contig10577: 5172-8066
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06270g
description POPTRDRAFT_816192; Kdo-8-phosphate synthase family protein
nr
ID XP_011026310.1
description PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
swissprot
ID Q9AV97
description 2-dehydro-3-deoxyphosphooctonate aldolase 1 OS=Arabidopsis thaliana GN=KDSA1 PE=1 SV=2
trembl
ID A9PC43
description Kdo-8-phosphate synthase family protein OS=Populus trichocarpa GN=POPTR_0002s06270g PE=2 SV=1
Gene Ontology
ID GO:0016740
description 2-dehydro-3-deoxyphosphooctonate aldolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010577_010 0.0 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
2 Hb_091349_010 0.110933562 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
3 Hb_001969_020 0.1189499758 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
4 Hb_000683_100 0.1316859199 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
5 Hb_122636_010 0.1387633777 - - dienelactone hydrolase family protein [Populus trichocarpa]
6 Hb_010931_140 0.1399524603 - - -
7 Hb_007574_070 0.146243363 - - fatty acid desaturase, putative [Ricinus communis]
8 Hb_006634_110 0.1468144073 - - BnaC04g40780D [Brassica napus]
9 Hb_001894_070 0.147497439 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
10 Hb_003071_070 0.1499256582 - - sucrose synthase 3 [Hevea brasiliensis]
11 Hb_000369_120 0.1520233292 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
12 Hb_000671_130 0.1578633709 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
13 Hb_048702_010 0.160260349 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
14 Hb_000107_110 0.1621769571 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_004881_030 0.1623890191 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
16 Hb_100137_010 0.1651728313 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
17 Hb_003052_180 0.1655944313 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
18 Hb_148130_020 0.166642533 - - -
19 Hb_000016_060 0.1671925611 - - mads box protein, putative [Ricinus communis]
20 Hb_001217_010 0.1677762861 - - hypothetical protein JCGZ_04022 [Jatropha curcas]

Gene co-expression network

sample Hb_010577_010 Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_001969_020 Hb_001969_020 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_122636_010 Hb_122636_010 Hb_010577_010--Hb_122636_010 Hb_010931_140 Hb_010931_140 Hb_010577_010--Hb_010931_140 Hb_007574_070 Hb_007574_070 Hb_010577_010--Hb_007574_070 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_033152_070 Hb_033152_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_001969_020--Hb_000683_100 Hb_000016_060 Hb_000016_060 Hb_001969_020--Hb_000016_060 Hb_000369_120 Hb_000369_120 Hb_001969_020--Hb_000369_120 Hb_002960_130 Hb_002960_130 Hb_001969_020--Hb_002960_130 Hb_001163_040 Hb_001163_040 Hb_001969_020--Hb_001163_040 Hb_000796_020 Hb_000796_020 Hb_000683_100--Hb_000796_020 Hb_000683_100--Hb_002960_130 Hb_148130_020 Hb_148130_020 Hb_000683_100--Hb_148130_020 Hb_000683_100--Hb_091349_010 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_025477_070 Hb_025477_070 Hb_010931_140--Hb_025477_070 Hb_010931_140--Hb_007574_070 Hb_010931_140--Hb_000369_120 Hb_010931_140--Hb_001969_020 Hb_004466_060 Hb_004466_060 Hb_010931_140--Hb_004466_060 Hb_003071_070 Hb_003071_070 Hb_007574_070--Hb_003071_070 Hb_007574_070--Hb_091349_010 Hb_002603_050 Hb_002603_050 Hb_007574_070--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_007574_070--Hb_003052_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06815 0.567811 1.70038 17.5535 0.823709 4.916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80874 3.23583 3.91087 3.44817 5.06431

CAGE analysis