Hb_000369_120

Information

Type -
Description -
Location Contig369: 181088-181303
Sequence    

Annotation

kegg
ID rcu:RCOM_1297890
description hypothetical protein
nr
ID XP_012078829.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
swissprot
ID Q9M9R9
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana GN=At1g14450 PE=3 SV=1
trembl
ID A0A067KJJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13360 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38002: 181015-183992
cDNA
(Sanger)
(ID:Location)		 040_A02.ab1: 181015-183965 , 047_O15.ab1: 181015-183965

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_120 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
2 Hb_027760_020 0.1128911464 - - hypothetical protein M569_04462, partial [Genlisea aurea]
3 Hb_001969_020 0.1332398815 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
4 Hb_000223_170 0.1426468938 - - -
5 Hb_010931_140 0.1487121609 - - -
6 Hb_000240_100 0.1499788135 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
7 Hb_010577_010 0.1520233292 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
8 Hb_000125_010 0.1581109425 transcription factor TF Family: mTERF -
9 Hb_038564_010 0.1581751913 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
10 Hb_088327_010 0.1663724209 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
11 Hb_002078_260 0.1667437173 - - unknown [Populus trichocarpa]
12 Hb_000340_520 0.1719147163 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
13 Hb_030982_020 0.177101234 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
14 Hb_025477_070 0.1774243265 - - hypothetical protein CICLE_v10006100mg [Citrus clementina]
15 Hb_005694_020 0.178428897 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
16 Hb_001163_040 0.1811186807 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
17 Hb_011512_050 0.1816688752 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
18 Hb_008642_030 0.182182186 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
19 Hb_002562_110 0.1830136146 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
20 Hb_003352_040 0.1858310111 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]

Gene co-expression network

sample Hb_000369_120 Hb_000369_120 Hb_027760_020 Hb_027760_020 Hb_000369_120--Hb_027760_020 Hb_001969_020 Hb_001969_020 Hb_000369_120--Hb_001969_020 Hb_000223_170 Hb_000223_170 Hb_000369_120--Hb_000223_170 Hb_010931_140 Hb_010931_140 Hb_000369_120--Hb_010931_140 Hb_000240_100 Hb_000240_100 Hb_000369_120--Hb_000240_100 Hb_010577_010 Hb_010577_010 Hb_000369_120--Hb_010577_010 Hb_008642_030 Hb_008642_030 Hb_027760_020--Hb_008642_030 Hb_005167_030 Hb_005167_030 Hb_027760_020--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_027760_020--Hb_002154_110 Hb_000016_170 Hb_000016_170 Hb_027760_020--Hb_000016_170 Hb_005694_020 Hb_005694_020 Hb_027760_020--Hb_005694_020 Hb_000683_100 Hb_000683_100 Hb_001969_020--Hb_000683_100 Hb_001969_020--Hb_010577_010 Hb_000016_060 Hb_000016_060 Hb_001969_020--Hb_000016_060 Hb_002960_130 Hb_002960_130 Hb_001969_020--Hb_002960_130 Hb_001163_040 Hb_001163_040 Hb_001969_020--Hb_001163_040 Hb_003352_040 Hb_003352_040 Hb_000223_170--Hb_003352_040 Hb_000125_010 Hb_000125_010 Hb_000223_170--Hb_000125_010 Hb_000340_520 Hb_000340_520 Hb_000223_170--Hb_000340_520 Hb_003688_110 Hb_003688_110 Hb_000223_170--Hb_003688_110 Hb_041205_010 Hb_041205_010 Hb_000223_170--Hb_041205_010 Hb_025477_070 Hb_025477_070 Hb_010931_140--Hb_025477_070 Hb_010931_140--Hb_010577_010 Hb_007574_070 Hb_007574_070 Hb_010931_140--Hb_007574_070 Hb_010931_140--Hb_001969_020 Hb_004466_060 Hb_004466_060 Hb_010931_140--Hb_004466_060 Hb_011512_050 Hb_011512_050 Hb_000240_100--Hb_011512_050 Hb_000240_100--Hb_001969_020 Hb_000240_100--Hb_027760_020 Hb_000217_010 Hb_000217_010 Hb_000240_100--Hb_000217_010 Hb_000240_120 Hb_000240_120 Hb_000240_100--Hb_000240_120 Hb_091349_010 Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_010577_010--Hb_000683_100 Hb_122636_010 Hb_122636_010 Hb_010577_010--Hb_122636_010 Hb_010577_010--Hb_007574_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.7373 37.1585 59.1394 1024.37 51.8454 520.799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
407.446 260.307 513.538 241.384 309.457

CAGE analysis