Hb_000240_120

Information

Type -
Description -
Location Contig240: 213791-214164
Sequence    

Annotation

kegg
ID ldo:LDBPK_310890
description ras-like small GTPases, putative
nr
ID ETO31302.1
description ras-related protein Rab-5B [Reticulomyxa filosa]
swissprot
ID -
description -
trembl
ID X6P175
description Ras-related protein Rab-5B OS=Reticulomyxa filosa GN=RFI_05820 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabf2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25138: 195324-216968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000240_120 0.0 - - ras-related protein Rab-5B [Reticulomyxa filosa]
2 Hb_011512_050 0.1233281592 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
3 Hb_175933_010 0.1347570754 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
4 Hb_001163_040 0.1400125008 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
5 Hb_132180_010 0.1584631042 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_001233_020 0.1614140203 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
7 Hb_001208_030 0.1622646587 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000125_020 0.1626766495 transcription factor TF Family: mTERF -
9 Hb_000483_400 0.1632882202 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
10 Hb_001969_020 0.165016859 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
11 Hb_076219_010 0.1654109783 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
12 Hb_000671_120 0.169801973 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
13 Hb_000240_100 0.1757723729 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
14 Hb_002078_260 0.1766385268 - - unknown [Populus trichocarpa]
15 Hb_001208_040 0.1789638248 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
16 Hb_007894_230 0.1802882893 - - 30S ribosomal protein S14, putative [Ricinus communis]
17 Hb_000016_060 0.1803472552 - - mads box protein, putative [Ricinus communis]
18 Hb_001220_010 0.1812709958 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
19 Hb_000683_100 0.183790804 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
20 Hb_005694_020 0.1851099194 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000240_120 Hb_000240_120 Hb_011512_050 Hb_011512_050 Hb_000240_120--Hb_011512_050 Hb_175933_010 Hb_175933_010 Hb_000240_120--Hb_175933_010 Hb_001163_040 Hb_001163_040 Hb_000240_120--Hb_001163_040 Hb_132180_010 Hb_132180_010 Hb_000240_120--Hb_132180_010 Hb_001233_020 Hb_001233_020 Hb_000240_120--Hb_001233_020 Hb_001208_030 Hb_001208_030 Hb_000240_120--Hb_001208_030 Hb_002078_260 Hb_002078_260 Hb_011512_050--Hb_002078_260 Hb_011512_050--Hb_001163_040 Hb_000240_100 Hb_000240_100 Hb_011512_050--Hb_000240_100 Hb_011512_050--Hb_132180_010 Hb_011214_100 Hb_011214_100 Hb_011512_050--Hb_011214_100 Hb_175933_010--Hb_001208_030 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_032972_010 Hb_032972_010 Hb_175933_010--Hb_032972_010 Hb_001208_040 Hb_001208_040 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020 Hb_001163_040--Hb_002078_260 Hb_001220_010 Hb_001220_010 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_007894_230 Hb_007894_230 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020 Hb_132180_010--Hb_002078_260 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_001233_020--Hb_001220_010 Hb_001233_020--Hb_004669_030 Hb_001233_020--Hb_000671_120 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110 Hb_001208_030--Hb_001208_040 Hb_145880_020 Hb_145880_020 Hb_001208_030--Hb_145880_020 Hb_002154_110 Hb_002154_110 Hb_001208_030--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_001208_030--Hb_008642_030 Hb_076219_010 Hb_076219_010 Hb_001208_030--Hb_076219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.07392 7.56133 8.75657 141.144 4.99167 34.8262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.3005 74.1739 32.8762 24.3847 8.03633

CAGE analysis