Hb_011512_050

Information

Type -
Description -
Location Contig11512: 34277-34495
Sequence    

Annotation

kegg
ID tcc:TCM_020440
description GRIM-19 protein isoform 1
nr
ID XP_007034518.1
description NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ET07
description NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 OS=Theobroma cacao GN=TCM_020440 PE=4 SV=1
Gene Ontology
ID GO:0008137
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04563: 22830-34541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_050 0.0 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
2 Hb_002078_260 0.1190487904 - - unknown [Populus trichocarpa]
3 Hb_001163_040 0.1208528915 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
4 Hb_000240_120 0.1233281592 - - ras-related protein Rab-5B [Reticulomyxa filosa]
5 Hb_000240_100 0.1369220817 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
6 Hb_132180_010 0.1455832611 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_011214_100 0.1477036447 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
8 Hb_011037_020 0.1509604222 - - unknown [Picea sitchensis]
9 Hb_007894_230 0.1517234304 - - 30S ribosomal protein S14, putative [Ricinus communis]
10 Hb_030982_020 0.1539552111 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
11 Hb_000671_120 0.1541425032 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
12 Hb_000340_520 0.1561174962 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
13 Hb_001220_010 0.1621536314 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
14 Hb_000342_160 0.1662700427 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
15 Hb_001969_020 0.1733667745 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
16 Hb_000125_020 0.1746239569 transcription factor TF Family: mTERF -
17 Hb_005694_020 0.1749869648 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
18 Hb_025288_010 0.1757989987 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
19 Hb_001233_020 0.1795590902 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
20 Hb_000369_120 0.1816688752 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]

Gene co-expression network

sample Hb_011512_050 Hb_011512_050 Hb_002078_260 Hb_002078_260 Hb_011512_050--Hb_002078_260 Hb_001163_040 Hb_001163_040 Hb_011512_050--Hb_001163_040 Hb_000240_120 Hb_000240_120 Hb_011512_050--Hb_000240_120 Hb_000240_100 Hb_000240_100 Hb_011512_050--Hb_000240_100 Hb_132180_010 Hb_132180_010 Hb_011512_050--Hb_132180_010 Hb_011214_100 Hb_011214_100 Hb_011512_050--Hb_011214_100 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_001163_040--Hb_002078_260 Hb_001220_010 Hb_001220_010 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020 Hb_175933_010 Hb_175933_010 Hb_000240_120--Hb_175933_010 Hb_000240_120--Hb_001163_040 Hb_000240_120--Hb_132180_010 Hb_001233_020 Hb_001233_020 Hb_000240_120--Hb_001233_020 Hb_001208_030 Hb_001208_030 Hb_000240_120--Hb_001208_030 Hb_000369_120 Hb_000369_120 Hb_000240_100--Hb_000369_120 Hb_001969_020 Hb_001969_020 Hb_000240_100--Hb_001969_020 Hb_027760_020 Hb_027760_020 Hb_000240_100--Hb_027760_020 Hb_000217_010 Hb_000217_010 Hb_000240_100--Hb_000217_010 Hb_000240_100--Hb_000240_120 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_011214_100--Hb_030982_020 Hb_011214_100--Hb_132180_010 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.55986 1.88309 6.28125 136.582 8.60282 62.437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9058 73.5327 50.7321 23.2696 13.5665

CAGE analysis