Hb_027760_020

Information

Type -
Description -
Location Contig27760: 23491-24497
Sequence    

Annotation

kegg
ID atr:s00010p00265250
description AMTR_s00010p00265250; hypothetical protein
nr
ID EPS70301.1
description hypothetical protein M569_04462, partial [Genlisea aurea]
swissprot
ID -
description -
trembl
ID S8CZ19
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_04462 PE=4 SV=1
Gene Ontology
ID GO:0003824
description methyltransferase-like protein 7b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28987: 11160-25555 , PASA_asmbl_28988: 23836-25527
cDNA
(Sanger)
(ID:Location)		 038_C22.ab1: 12245-25555

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027760_020 0.0 - - hypothetical protein M569_04462, partial [Genlisea aurea]
2 Hb_000369_120 0.1128911464 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
3 Hb_008642_030 0.1515967165 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
4 Hb_005167_030 0.1535490211 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
5 Hb_002154_110 0.1550048969 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_000016_170 0.1641124508 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005694_020 0.1647281582 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
8 Hb_002078_260 0.1670050222 - - unknown [Populus trichocarpa]
9 Hb_158163_010 0.168216466 - - protein binding protein, putative [Ricinus communis]
10 Hb_000240_100 0.1686396833 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
11 Hb_088327_010 0.1791327505 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
12 Hb_006538_140 0.1808417412 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
13 Hb_000223_170 0.1816316715 - - -
14 Hb_008206_100 0.1828181022 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
15 Hb_007894_230 0.1829937107 - - 30S ribosomal protein S14, putative [Ricinus communis]
16 Hb_003103_010 0.1831060676 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000077_200 0.1839055836 - - PREDICTED: thioredoxin [Jatropha curcas]
18 Hb_025288_010 0.1842281457 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
19 Hb_001163_040 0.1861757267 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
20 Hb_002200_050 0.1863693119 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_027760_020 Hb_027760_020 Hb_000369_120 Hb_000369_120 Hb_027760_020--Hb_000369_120 Hb_008642_030 Hb_008642_030 Hb_027760_020--Hb_008642_030 Hb_005167_030 Hb_005167_030 Hb_027760_020--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_027760_020--Hb_002154_110 Hb_000016_170 Hb_000016_170 Hb_027760_020--Hb_000016_170 Hb_005694_020 Hb_005694_020 Hb_027760_020--Hb_005694_020 Hb_001969_020 Hb_001969_020 Hb_000369_120--Hb_001969_020 Hb_000223_170 Hb_000223_170 Hb_000369_120--Hb_000223_170 Hb_010931_140 Hb_010931_140 Hb_000369_120--Hb_010931_140 Hb_000240_100 Hb_000240_100 Hb_000369_120--Hb_000240_100 Hb_010577_010 Hb_010577_010 Hb_000369_120--Hb_010577_010 Hb_008642_030--Hb_002154_110 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_003103_010 Hb_003103_010 Hb_008642_030--Hb_003103_010 Hb_000563_200 Hb_000563_200 Hb_008642_030--Hb_000563_200 Hb_008642_030--Hb_000016_170 Hb_008642_030--Hb_005167_030 Hb_005167_030--Hb_000016_170 Hb_005496_090 Hb_005496_090 Hb_005167_030--Hb_005496_090 Hb_005167_030--Hb_002154_110 Hb_027751_060 Hb_027751_060 Hb_005167_030--Hb_027751_060 Hb_000292_060 Hb_000292_060 Hb_005167_030--Hb_000292_060 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_000016_170 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_000016_170--Hb_005496_090 Hb_000946_100 Hb_000946_100 Hb_000016_170--Hb_000946_100 Hb_002078_260 Hb_002078_260 Hb_005694_020--Hb_002078_260 Hb_007894_230 Hb_007894_230 Hb_005694_020--Hb_007894_230 Hb_082006_010 Hb_082006_010 Hb_005694_020--Hb_082006_010 Hb_041205_010 Hb_041205_010 Hb_005694_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_005694_020--Hb_132180_010 Hb_029142_070 Hb_029142_070 Hb_005694_020--Hb_029142_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.705889 0.599925 0.59441 11.2914 0.239124 5.90128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.4476 5.72979 5.97663 2.96538 5.80216

CAGE analysis