Hb_000946_100

Information

Type -
Description -
Location Contig946: 116537-118583
Sequence    

Annotation

kegg
ID cam:101491406
description uncharacterized LOC101491406
nr
ID XP_012085442.1
description PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15158 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63263: 116444-118550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_100 0.0 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
2 Hb_000016_170 0.11521531 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006573_290 0.1183934102 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
4 Hb_002876_020 0.1211726 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
5 Hb_002154_110 0.1214863804 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_002677_020 0.1226267698 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
7 Hb_005496_090 0.1251749807 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
8 Hb_001754_080 0.126498768 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
9 Hb_002320_080 0.1272789392 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
10 Hb_005167_030 0.1308481725 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
11 Hb_000928_060 0.1309363637 - - transporter, putative [Ricinus communis]
12 Hb_145880_020 0.1318304638 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
13 Hb_000077_200 0.1340635913 - - PREDICTED: thioredoxin [Jatropha curcas]
14 Hb_000377_150 0.1372822162 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
15 Hb_000436_030 0.1373527621 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000815_290 0.1387013344 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
17 Hb_000649_140 0.1405221406 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
18 Hb_000771_060 0.1405706229 - - PREDICTED: spermine synthase [Jatropha curcas]
19 Hb_003106_100 0.1415434339 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
20 Hb_004007_110 0.143181726 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000946_100 Hb_000946_100 Hb_000016_170 Hb_000016_170 Hb_000946_100--Hb_000016_170 Hb_006573_290 Hb_006573_290 Hb_000946_100--Hb_006573_290 Hb_002876_020 Hb_002876_020 Hb_000946_100--Hb_002876_020 Hb_002154_110 Hb_002154_110 Hb_000946_100--Hb_002154_110 Hb_002677_020 Hb_002677_020 Hb_000946_100--Hb_002677_020 Hb_005496_090 Hb_005496_090 Hb_000946_100--Hb_005496_090 Hb_005167_030 Hb_005167_030 Hb_000016_170--Hb_005167_030 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_000016_170--Hb_005496_090 Hb_008642_030 Hb_008642_030 Hb_000016_170--Hb_008642_030 Hb_000016_170--Hb_002154_110 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_148209_010 Hb_148209_010 Hb_006573_290--Hb_148209_010 Hb_021409_080 Hb_021409_080 Hb_006573_290--Hb_021409_080 Hb_006573_290--Hb_002154_110 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_003106_100 Hb_003106_100 Hb_002876_020--Hb_003106_100 Hb_002876_020--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_002876_020--Hb_001019_150 Hb_002876_020--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_003103_010 Hb_003103_010 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_008642_030 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_000733_180 Hb_000733_180 Hb_002677_020--Hb_000733_180 Hb_008566_030 Hb_008566_030 Hb_002677_020--Hb_008566_030 Hb_001489_110 Hb_001489_110 Hb_002677_020--Hb_001489_110 Hb_000403_070 Hb_000403_070 Hb_002677_020--Hb_000403_070 Hb_005016_040 Hb_005016_040 Hb_002677_020--Hb_005016_040 Hb_006153_060 Hb_006153_060 Hb_002677_020--Hb_006153_060 Hb_130719_010 Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_000056_250 Hb_000056_250 Hb_005496_090--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005496_090--Hb_138585_040 Hb_083380_010 Hb_083380_010 Hb_005496_090--Hb_083380_010 Hb_003291_020 Hb_003291_020 Hb_005496_090--Hb_003291_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.556 2.33016 4.39529 14.3231 0.827891 2.48893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94839 14.5455 10.7124 4.28007 9.97958

CAGE analysis