Hb_003103_010

Information

Type -
Description -
Location Contig3103: 5063-11438
Sequence    

Annotation

kegg
ID rcu:RCOM_1027640
description hypothetical protein
nr
ID XP_002526388.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6PGS5
description Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
trembl
ID B9SK69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1027640 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 56-b isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32841: 7096-7246 , PASA_asmbl_32842: 5024-11359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003103_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002154_110 0.065594896 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
3 Hb_008642_030 0.1016316188 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
4 Hb_008206_100 0.1220250078 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
5 Hb_006573_290 0.1370534916 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
6 Hb_011249_020 0.139727646 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
7 Hb_001195_070 0.1425373951 - - PREDICTED: protein RER1B-like [Jatropha curcas]
8 Hb_015675_030 0.1434399014 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
9 Hb_000240_030 0.1463856028 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002477_010 0.1485304794 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000563_200 0.1522641351 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
12 Hb_000016_170 0.1536173999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000946_100 0.1549339844 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
14 Hb_158163_010 0.1565808209 - - protein binding protein, putative [Ricinus communis]
15 Hb_001269_190 0.1567691249 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
16 Hb_002876_020 0.1570311231 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
17 Hb_001489_110 0.1580319122 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
18 Hb_012022_050 0.1591933231 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
19 Hb_001584_240 0.1592303767 - - ADP-ribosylation factor [Gossypium barbadense]
20 Hb_027073_010 0.1597300931 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]

Gene co-expression network

sample Hb_003103_010 Hb_003103_010 Hb_002154_110 Hb_002154_110 Hb_003103_010--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_003103_010--Hb_008642_030 Hb_008206_100 Hb_008206_100 Hb_003103_010--Hb_008206_100 Hb_006573_290 Hb_006573_290 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_001195_070 Hb_001195_070 Hb_003103_010--Hb_001195_070 Hb_002154_110--Hb_008642_030 Hb_000016_170 Hb_000016_170 Hb_002154_110--Hb_000016_170 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_008642_030--Hb_000563_200 Hb_008642_030--Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_008642_030--Hb_005167_030 Hb_008206_100--Hb_002154_110 Hb_175933_010 Hb_175933_010 Hb_008206_100--Hb_175933_010 Hb_000260_790 Hb_000260_790 Hb_008206_100--Hb_000260_790 Hb_003994_020 Hb_003994_020 Hb_008206_100--Hb_003994_020 Hb_008206_100--Hb_008642_030 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_148209_010 Hb_148209_010 Hb_006573_290--Hb_148209_010 Hb_021409_080 Hb_021409_080 Hb_006573_290--Hb_021409_080 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_000946_100 Hb_000946_100 Hb_006573_290--Hb_000946_100 Hb_001307_030 Hb_001307_030 Hb_011249_020--Hb_001307_030 Hb_012244_010 Hb_012244_010 Hb_011249_020--Hb_012244_010 Hb_000297_120 Hb_000297_120 Hb_011249_020--Hb_000297_120 Hb_000240_030 Hb_000240_030 Hb_011249_020--Hb_000240_030 Hb_011249_020--Hb_000649_140 Hb_006683_070 Hb_006683_070 Hb_011249_020--Hb_006683_070 Hb_008699_030 Hb_008699_030 Hb_001195_070--Hb_008699_030 Hb_015675_030 Hb_015675_030 Hb_001195_070--Hb_015675_030 Hb_000175_260 Hb_000175_260 Hb_001195_070--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_001195_070--Hb_001584_240 Hb_000671_130 Hb_000671_130 Hb_001195_070--Hb_000671_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.74891 0.530822 0.962957 7.89089 0.768076 1.25847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42458 4.50031 2.29998 1.95491 4.19905

CAGE analysis