Hb_001195_070

Information

Type -
Description -
Location Contig1195: 42897-44411
Sequence    

Annotation

kegg
ID vvi:100241970
description protein RER1B
nr
ID XP_012071890.1
description PREDICTED: protein RER1B-like [Jatropha curcas]
swissprot
ID O48671
description Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2
trembl
ID A0A067KQM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04451 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05770: 42284-44658
cDNA
(Sanger)
(ID:Location)		 015_A18.ab1: 42284-44203

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_070 0.0 - - PREDICTED: protein RER1B-like [Jatropha curcas]
2 Hb_008699_030 0.1316922941 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
3 Hb_015675_030 0.1383285924 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
4 Hb_000175_260 0.1408470483 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
5 Hb_001584_240 0.1418258628 - - ADP-ribosylation factor [Gossypium barbadense]
6 Hb_003103_010 0.1425373951 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000671_130 0.1473901337 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
8 Hb_029920_060 0.1502451371 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
9 Hb_000294_050 0.1513415835 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
10 Hb_001486_040 0.152982716 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
11 Hb_003911_020 0.1541643899 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
12 Hb_003207_020 0.1562326212 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
13 Hb_000240_030 0.1587711232 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000107_110 0.1601046292 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_002955_020 0.1625706165 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
16 Hb_007477_050 0.162910163 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
17 Hb_001609_040 0.1630015735 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
18 Hb_079483_020 0.1641912726 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
19 Hb_003453_050 0.1654375872 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
20 Hb_003994_300 0.1674507018 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001195_070 Hb_001195_070 Hb_008699_030 Hb_008699_030 Hb_001195_070--Hb_008699_030 Hb_015675_030 Hb_015675_030 Hb_001195_070--Hb_015675_030 Hb_000175_260 Hb_000175_260 Hb_001195_070--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_001195_070--Hb_001584_240 Hb_003103_010 Hb_003103_010 Hb_001195_070--Hb_003103_010 Hb_000671_130 Hb_000671_130 Hb_001195_070--Hb_000671_130 Hb_008699_030--Hb_015675_030 Hb_000240_030 Hb_000240_030 Hb_008699_030--Hb_000240_030 Hb_003207_020 Hb_003207_020 Hb_008699_030--Hb_003207_020 Hb_000946_110 Hb_000946_110 Hb_008699_030--Hb_000946_110 Hb_001124_100 Hb_001124_100 Hb_008699_030--Hb_001124_100 Hb_001142_010 Hb_001142_010 Hb_015675_030--Hb_001142_010 Hb_015675_030--Hb_000240_030 Hb_003453_050 Hb_003453_050 Hb_015675_030--Hb_003453_050 Hb_000381_010 Hb_000381_010 Hb_015675_030--Hb_000381_010 Hb_029920_060 Hb_029920_060 Hb_000175_260--Hb_029920_060 Hb_000254_140 Hb_000254_140 Hb_000175_260--Hb_000254_140 Hb_000345_080 Hb_000345_080 Hb_000175_260--Hb_000345_080 Hb_000294_050 Hb_000294_050 Hb_000175_260--Hb_000294_050 Hb_000742_030 Hb_000742_030 Hb_000175_260--Hb_000742_030 Hb_002960_130 Hb_002960_130 Hb_001584_240--Hb_002960_130 Hb_001584_240--Hb_000671_130 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001208_040 Hb_001208_040 Hb_001584_240--Hb_001208_040 Hb_002154_110 Hb_002154_110 Hb_003103_010--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_003103_010--Hb_008642_030 Hb_008206_100 Hb_008206_100 Hb_003103_010--Hb_008206_100 Hb_006573_290 Hb_006573_290 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_122636_010 Hb_122636_010 Hb_000671_130--Hb_122636_010 Hb_091349_010 Hb_091349_010 Hb_000671_130--Hb_091349_010 Hb_000671_130--Hb_003207_020 Hb_033152_070 Hb_033152_070 Hb_000671_130--Hb_033152_070 Hb_000107_110 Hb_000107_110 Hb_000671_130--Hb_000107_110 Hb_000671_130--Hb_048476_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.687466 0.563507 0.796152 4.66071 0.180713 0.803319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02712 2.07472 0.772113 0.770812 2.97922

CAGE analysis