Hb_008642_030

Information

Type -
Description -
Location Contig8642: 33709-39461
Sequence    

Annotation

kegg
ID rcu:RCOM_0658900
description uridylate kinase plant, putative (EC:2.7.4.10)
nr
ID XP_012083769.1
description PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
swissprot
ID O04905
description UMP-CMP kinase 3 OS=Arabidopsis thaliana GN=UMK3 PE=1 SV=1
trembl
ID A0A067K9F1
description UMP-CMP kinase OS=Jatropha curcas GN=JCGZ_14686 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ump-cmp kinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60875: 33677-39403 , PASA_asmbl_60877: 35686-36461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008642_030 0.0 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
2 Hb_002154_110 0.0715805713 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
3 Hb_158163_010 0.0940125604 - - protein binding protein, putative [Ricinus communis]
4 Hb_003103_010 0.1016316188 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000563_200 0.1085661508 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
6 Hb_000016_170 0.1094586243 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005167_030 0.1157651355 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
8 Hb_001242_080 0.1202799868 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
9 Hb_000120_770 0.1259191801 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001252_210 0.1272157003 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
11 Hb_011249_020 0.1275354961 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
12 Hb_001353_010 0.1280640119 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
13 Hb_003880_040 0.1291867145 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
14 Hb_002284_230 0.1320359081 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
15 Hb_145880_020 0.1323825895 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
16 Hb_024758_010 0.1326057299 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
17 Hb_001208_030 0.133783862 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000136_100 0.134185678 - - PREDICTED: syntaxin-61 [Jatropha curcas]
19 Hb_001489_110 0.1378280697 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
20 Hb_003126_070 0.1381323567 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008642_030 Hb_008642_030 Hb_002154_110 Hb_002154_110 Hb_008642_030--Hb_002154_110 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_003103_010 Hb_003103_010 Hb_008642_030--Hb_003103_010 Hb_000563_200 Hb_000563_200 Hb_008642_030--Hb_000563_200 Hb_000016_170 Hb_000016_170 Hb_008642_030--Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_008642_030--Hb_005167_030 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_000016_170 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_012022_050 Hb_012022_050 Hb_158163_010--Hb_012022_050 Hb_001953_080 Hb_001953_080 Hb_158163_010--Hb_001953_080 Hb_000136_100 Hb_000136_100 Hb_158163_010--Hb_000136_100 Hb_007383_020 Hb_007383_020 Hb_158163_010--Hb_007383_020 Hb_158163_010--Hb_002154_110 Hb_008206_100 Hb_008206_100 Hb_003103_010--Hb_008206_100 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_001195_070 Hb_001195_070 Hb_003103_010--Hb_001195_070 Hb_001410_060 Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_148209_010 Hb_148209_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_003880_040 Hb_003880_040 Hb_000563_200--Hb_003880_040 Hb_000016_170--Hb_005167_030 Hb_000016_170--Hb_003880_040 Hb_005496_090 Hb_005496_090 Hb_000016_170--Hb_005496_090 Hb_000946_100 Hb_000946_100 Hb_000016_170--Hb_000946_100 Hb_005167_030--Hb_005496_090 Hb_005167_030--Hb_002154_110 Hb_027751_060 Hb_027751_060 Hb_005167_030--Hb_027751_060 Hb_000292_060 Hb_000292_060 Hb_005167_030--Hb_000292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0646 5.62168 23.2189 133.454 17.1603 44.0262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.3165 93.4463 68.0952 55.6858 73.0599

CAGE analysis