Hb_005167_030

Information

Type -
Description -
Location Contig5167: 22004-25465
Sequence    

Annotation

kegg
ID mdm:103414777
description serine/threonine-protein kinase At5g01020-like
nr
ID XP_010490188.1
description PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
swissprot
ID Q9LEA3
description Putative L-type lectin-domain containing receptor kinase V.6 OS=Arabidopsis thaliana GN=LECRK56 PE=3 SV=3
trembl
ID M1B211
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013545 PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46535: 9408-24864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005167_030 0.0 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
2 Hb_000016_170 0.0696588285 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008642_030 0.1157651355 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
4 Hb_005496_090 0.1166003504 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
5 Hb_002154_110 0.1208226998 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_027751_060 0.1208251742 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
7 Hb_000292_060 0.1297313926 - - transporter, putative [Ricinus communis]
8 Hb_000946_100 0.1308481725 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
9 Hb_000077_200 0.1343832914 - - PREDICTED: thioredoxin [Jatropha curcas]
10 Hb_000056_250 0.1352390493 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
11 Hb_145880_020 0.1397696563 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
12 Hb_000563_200 0.1436231353 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
13 Hb_000574_130 0.1447953955 - - calcineurin-like protein [Hevea brasiliensis]
14 Hb_003880_040 0.1448389505 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
15 Hb_130719_010 0.1448734908 - - V-type proton ATPase subunit E [Hevea brasiliensis]
16 Hb_148209_010 0.1477128451 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_002631_260 0.1480310745 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
18 Hb_000260_790 0.1482854296 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
19 Hb_000046_350 0.1522338884 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001284_030 0.1526364183 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005167_030 Hb_005167_030 Hb_000016_170 Hb_000016_170 Hb_005167_030--Hb_000016_170 Hb_008642_030 Hb_008642_030 Hb_005167_030--Hb_008642_030 Hb_005496_090 Hb_005496_090 Hb_005167_030--Hb_005496_090 Hb_002154_110 Hb_002154_110 Hb_005167_030--Hb_002154_110 Hb_027751_060 Hb_027751_060 Hb_005167_030--Hb_027751_060 Hb_000292_060 Hb_000292_060 Hb_005167_030--Hb_000292_060 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_000016_170--Hb_005496_090 Hb_000016_170--Hb_008642_030 Hb_000016_170--Hb_002154_110 Hb_000946_100 Hb_000946_100 Hb_000016_170--Hb_000946_100 Hb_008642_030--Hb_002154_110 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_003103_010 Hb_003103_010 Hb_008642_030--Hb_003103_010 Hb_000563_200 Hb_000563_200 Hb_008642_030--Hb_000563_200 Hb_130719_010 Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_000056_250 Hb_000056_250 Hb_005496_090--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005496_090--Hb_138585_040 Hb_083380_010 Hb_083380_010 Hb_005496_090--Hb_083380_010 Hb_003291_020 Hb_003291_020 Hb_005496_090--Hb_003291_020 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_027751_060--Hb_000056_250 Hb_000096_150 Hb_000096_150 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_000417_260 Hb_000417_260 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_000436_030 Hb_000436_030 Hb_000292_060--Hb_000436_030 Hb_002324_010 Hb_002324_010 Hb_000292_060--Hb_002324_010 Hb_005278_040 Hb_005278_040 Hb_000292_060--Hb_005278_040 Hb_000320_330 Hb_000320_330 Hb_000292_060--Hb_000320_330 Hb_000292_060--Hb_000417_260 Hb_000638_170 Hb_000638_170 Hb_000292_060--Hb_000638_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41264 2.15025 4.55911 29.9789 2.64335 10.3075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2468 26.212 30.0003 10.6083 16.9344

CAGE analysis