Hb_083380_010

Information

Type -
Description -
Location Contig83380: 9458-10438
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083380_010 0.0 - - -
2 Hb_005496_090 0.1077939711 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
3 Hb_138585_040 0.119838414 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
4 Hb_001157_080 0.1228611883 - - zinc finger protein, putative [Ricinus communis]
5 Hb_001172_100 0.123953519 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
6 Hb_005278_040 0.1246147686 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
7 Hb_130719_010 0.1277811485 - - V-type proton ATPase subunit E [Hevea brasiliensis]
8 Hb_023344_050 0.1301637641 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
9 Hb_013893_010 0.1320361496 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
10 Hb_000056_250 0.1373377952 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
11 Hb_000049_050 0.1465787855 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
12 Hb_002078_440 0.1486124814 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
13 Hb_027751_060 0.1499556077 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
14 Hb_001008_090 0.1501864757 - - cytochrome C oxidase, putative [Ricinus communis]
15 Hb_000320_330 0.1504116205 - - uncharacterized protein LOC100527884 [Glycine max]
16 Hb_000417_260 0.1504688673 - - protein with unknown function [Ricinus communis]
17 Hb_001377_420 0.1515347335 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001481_140 0.1532514574 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
19 Hb_001102_210 0.1532617996 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
20 Hb_003117_010 0.1533658595 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_083380_010 Hb_083380_010 Hb_005496_090 Hb_005496_090 Hb_083380_010--Hb_005496_090 Hb_138585_040 Hb_138585_040 Hb_083380_010--Hb_138585_040 Hb_001157_080 Hb_001157_080 Hb_083380_010--Hb_001157_080 Hb_001172_100 Hb_001172_100 Hb_083380_010--Hb_001172_100 Hb_005278_040 Hb_005278_040 Hb_083380_010--Hb_005278_040 Hb_130719_010 Hb_130719_010 Hb_083380_010--Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_000056_250 Hb_000056_250 Hb_005496_090--Hb_000056_250 Hb_000016_170 Hb_000016_170 Hb_005496_090--Hb_000016_170 Hb_005496_090--Hb_138585_040 Hb_003291_020 Hb_003291_020 Hb_005496_090--Hb_003291_020 Hb_000049_050 Hb_000049_050 Hb_138585_040--Hb_000049_050 Hb_138585_040--Hb_001172_100 Hb_002324_010 Hb_002324_010 Hb_138585_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_138585_040--Hb_000384_120 Hb_002631_260 Hb_002631_260 Hb_138585_040--Hb_002631_260 Hb_138585_040--Hb_005278_040 Hb_001157_080--Hb_001172_100 Hb_001157_080--Hb_138585_040 Hb_000302_280 Hb_000302_280 Hb_001157_080--Hb_000302_280 Hb_000707_020 Hb_000707_020 Hb_001157_080--Hb_000707_020 Hb_001157_080--Hb_000384_120 Hb_001157_080--Hb_000049_050 Hb_001172_100--Hb_000384_120 Hb_001172_100--Hb_002324_010 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_005045_070 Hb_005045_070 Hb_001172_100--Hb_005045_070 Hb_000417_260 Hb_000417_260 Hb_005278_040--Hb_000417_260 Hb_001008_090 Hb_001008_090 Hb_005278_040--Hb_001008_090 Hb_005278_040--Hb_002324_010 Hb_005278_040--Hb_000384_120 Hb_005278_040--Hb_000056_250 Hb_130719_010--Hb_000056_250 Hb_130719_010--Hb_003291_020 Hb_001123_160 Hb_001123_160 Hb_130719_010--Hb_001123_160 Hb_000685_050 Hb_000685_050 Hb_130719_010--Hb_000685_050 Hb_005054_260 Hb_005054_260 Hb_130719_010--Hb_005054_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128609 0.181695 0.132555 0.868613 0.0431388 0.279025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.696467 1.72032 1.64355 0.544835 0.454703

CAGE analysis