Hb_001225_010

Information

Type -
Description -
Location Contig1225: 9095-10960
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012904mg
description hypothetical protein
nr
ID CDO97289.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068TMW8
description Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014573001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06826: 8907-10927 , PASA_asmbl_06827: 9809-10500
cDNA
(Sanger)
(ID:Location)		 001_D04.ab1: 8924-10843 , 009_G11.ab1: 8927-10844 , 009_O20.ab1: 8928-10843 , 015_H20.ab1: 8936-10815 , 017_K03.ab1: 8957-10791 , 021_J21.ab1: 8923-10852 , 025_D01.ab1: 9028-10843 , 033_O03.ab1: 8928-10927 , 035_O19.ab1: 8905-10831 , 040_F03.ab1: 8957-10791 , 048_F02.ab1: 8957-10791 , 052_C22.ab1: 8992-10758 , 052_E13.ab1: 8928-10839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001225_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_001172_100 0.0820979567 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
3 Hb_003020_330 0.0996438601 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
4 Hb_000110_170 0.1018664794 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000203_020 0.1028279842 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
6 Hb_001449_090 0.112507056 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
7 Hb_000878_020 0.114011386 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
8 Hb_006006_050 0.1151311972 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
9 Hb_003540_200 0.1161184611 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
10 Hb_000915_120 0.1190407099 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
11 Hb_000320_330 0.1192811971 - - uncharacterized protein LOC100527884 [Glycine max]
12 Hb_002324_010 0.1202227577 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
13 Hb_001157_080 0.1225100534 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000239_030 0.1226316461 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
15 Hb_005045_070 0.123207895 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
16 Hb_002838_030 0.1245975942 - - 40S ribosomal protein S25A [Hevea brasiliensis]
17 Hb_000302_280 0.1254822977 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
18 Hb_138585_040 0.1261316588 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
19 Hb_025645_030 0.1275114421 - - -
20 Hb_001766_030 0.1285043594 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]

Gene co-expression network

sample Hb_001225_010 Hb_001225_010 Hb_001172_100 Hb_001172_100 Hb_001225_010--Hb_001172_100 Hb_003020_330 Hb_003020_330 Hb_001225_010--Hb_003020_330 Hb_000110_170 Hb_000110_170 Hb_001225_010--Hb_000110_170 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_000878_020 Hb_000878_020 Hb_001225_010--Hb_000878_020 Hb_138585_040 Hb_138585_040 Hb_001172_100--Hb_138585_040 Hb_000384_120 Hb_000384_120 Hb_001172_100--Hb_000384_120 Hb_002324_010 Hb_002324_010 Hb_001172_100--Hb_002324_010 Hb_005045_070 Hb_005045_070 Hb_001172_100--Hb_005045_070 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_002838_030 Hb_002838_030 Hb_003020_330--Hb_002838_030 Hb_007313_080 Hb_007313_080 Hb_003020_330--Hb_007313_080 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_003020_330--Hb_000110_170 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_000915_120 Hb_000915_120 Hb_000203_020--Hb_000915_120 Hb_012251_010 Hb_012251_010 Hb_000203_020--Hb_012251_010 Hb_000203_020--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000203_020--Hb_000042_260 Hb_000045_250 Hb_000045_250 Hb_000203_020--Hb_000045_250 Hb_002006_130 Hb_002006_130 Hb_000203_020--Hb_002006_130 Hb_001307_210 Hb_001307_210 Hb_001449_090--Hb_001307_210 Hb_002909_130 Hb_002909_130 Hb_001449_090--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_001449_090--Hb_012395_130 Hb_001449_090--Hb_011377_020 Hb_001449_090--Hb_000878_020 Hb_000878_020--Hb_006588_080 Hb_001386_050 Hb_001386_050 Hb_000878_020--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_000878_020--Hb_008948_050 Hb_002344_070 Hb_002344_070 Hb_000878_020--Hb_002344_070 Hb_000878_020--Hb_000915_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.1869 28.168 37.6271 137.105 39.3093 52.7297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.856 506.381 197.777 76.8901 69.566

CAGE analysis