Hb_008206_100

Information

Type -
Description -
Location Contig8206: 96705-100911
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012924mg
description hypothetical protein
nr
ID XP_012077487.1
description PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07816 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59590: 98545-99167 , PASA_asmbl_59593: 91642-99797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008206_100 0.0 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
2 Hb_002154_110 0.1211269944 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
3 Hb_003103_010 0.1220250078 - - conserved hypothetical protein [Ricinus communis]
4 Hb_175933_010 0.1394955263 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
5 Hb_000260_790 0.1540450992 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
6 Hb_003994_020 0.1550500291 - - -
7 Hb_008642_030 0.1556345263 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
8 Hb_001208_030 0.1579321205 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002477_010 0.1634400492 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002631_260 0.1679790329 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
11 Hb_006153_030 0.1718437535 - - PREDICTED: probable transaldolase [Jatropha curcas]
12 Hb_000016_170 0.1724329945 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000463_130 0.1726590454 - - unnamed protein product [Coffea canephora]
14 Hb_000077_200 0.1749247522 - - PREDICTED: thioredoxin [Jatropha curcas]
15 Hb_001208_040 0.1766074797 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
16 Hb_001635_130 0.1781742739 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
17 Hb_000049_050 0.1822279278 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
18 Hb_077399_010 0.1823256696 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
19 Hb_027760_020 0.1828181022 - - hypothetical protein M569_04462, partial [Genlisea aurea]
20 Hb_005694_020 0.1836797981 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_008206_100 Hb_008206_100 Hb_002154_110 Hb_002154_110 Hb_008206_100--Hb_002154_110 Hb_003103_010 Hb_003103_010 Hb_008206_100--Hb_003103_010 Hb_175933_010 Hb_175933_010 Hb_008206_100--Hb_175933_010 Hb_000260_790 Hb_000260_790 Hb_008206_100--Hb_000260_790 Hb_003994_020 Hb_003994_020 Hb_008206_100--Hb_003994_020 Hb_008642_030 Hb_008642_030 Hb_008206_100--Hb_008642_030 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_008642_030 Hb_000016_170 Hb_000016_170 Hb_002154_110--Hb_000016_170 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_003103_010--Hb_008642_030 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_001195_070 Hb_001195_070 Hb_003103_010--Hb_001195_070 Hb_000240_120 Hb_000240_120 Hb_175933_010--Hb_000240_120 Hb_001208_030 Hb_001208_030 Hb_175933_010--Hb_001208_030 Hb_032972_010 Hb_032972_010 Hb_175933_010--Hb_032972_010 Hb_001208_040 Hb_001208_040 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020 Hb_077399_010 Hb_077399_010 Hb_000260_790--Hb_077399_010 Hb_000049_050 Hb_000049_050 Hb_000260_790--Hb_000049_050 Hb_002631_260 Hb_002631_260 Hb_000260_790--Hb_002631_260 Hb_001195_490 Hb_001195_490 Hb_000260_790--Hb_001195_490 Hb_000975_230 Hb_000975_230 Hb_000260_790--Hb_000975_230 Hb_138585_040 Hb_138585_040 Hb_000260_790--Hb_138585_040 Hb_003994_020--Hb_001208_040 Hb_003994_020--Hb_003103_010 Hb_003994_020--Hb_001208_030 Hb_001584_240 Hb_001584_240 Hb_003994_020--Hb_001584_240 Hb_003994_020--Hb_175933_010 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_008642_030--Hb_000563_200 Hb_008642_030--Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_008642_030--Hb_005167_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52699 1.68462 3.69542 30.7642 0.818795 6.84645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.979 24.0275 6.17538 6.91159 12.0736

CAGE analysis