Hb_077399_010

Information

Type -
Description -
Location Contig77399: 290-1434
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09910g
description POPTRDRAFT_830765; hypothetical protein
nr
ID XP_002303456.2
description hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GZU0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09910g PE=4 SV=2
Gene Ontology
ID GO:0005840
description 50s ribosomal protein l35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077399_010 0.0 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
2 Hb_000260_790 0.0767771073 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
3 Hb_002324_010 0.118213418 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
4 Hb_000049_050 0.11981633 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
5 Hb_002631_260 0.1221049756 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
6 Hb_005496_090 0.128472395 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
7 Hb_138585_040 0.1298126761 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
8 Hb_001172_100 0.1304732868 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
9 Hb_005045_070 0.1305434941 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
10 Hb_000975_230 0.1348862177 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
11 Hb_000292_060 0.1384302339 - - transporter, putative [Ricinus communis]
12 Hb_000016_170 0.1407023374 - - conserved hypothetical protein [Ricinus communis]
13 Hb_145880_020 0.1445269435 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
14 Hb_000320_330 0.1474450529 - - uncharacterized protein LOC100527884 [Glycine max]
15 Hb_005167_030 0.1529879318 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
16 Hb_001225_010 0.1573169571 - - unnamed protein product [Coffea canephora]
17 Hb_000215_330 0.1574336829 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
18 Hb_000836_010 0.1583732445 - - beta-cyanoalanine synthase [Hevea brasiliensis]
19 Hb_005278_040 0.158741079 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
20 Hb_025645_030 0.1592087453 - - -

Gene co-expression network

sample Hb_077399_010 Hb_077399_010 Hb_000260_790 Hb_000260_790 Hb_077399_010--Hb_000260_790 Hb_002324_010 Hb_002324_010 Hb_077399_010--Hb_002324_010 Hb_000049_050 Hb_000049_050 Hb_077399_010--Hb_000049_050 Hb_002631_260 Hb_002631_260 Hb_077399_010--Hb_002631_260 Hb_005496_090 Hb_005496_090 Hb_077399_010--Hb_005496_090 Hb_138585_040 Hb_138585_040 Hb_077399_010--Hb_138585_040 Hb_000260_790--Hb_000049_050 Hb_000260_790--Hb_002631_260 Hb_001195_490 Hb_001195_490 Hb_000260_790--Hb_001195_490 Hb_000975_230 Hb_000975_230 Hb_000260_790--Hb_000975_230 Hb_000260_790--Hb_138585_040 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_005045_070 Hb_005045_070 Hb_002324_010--Hb_005045_070 Hb_000384_120 Hb_000384_120 Hb_002324_010--Hb_000384_120 Hb_001172_100 Hb_001172_100 Hb_002324_010--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_002324_010--Hb_138585_040 Hb_000049_050--Hb_138585_040 Hb_000049_050--Hb_002631_260 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_000049_050--Hb_001172_100 Hb_000049_050--Hb_005045_070 Hb_002631_260--Hb_138585_040 Hb_002631_260--Hb_002324_010 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040 Hb_130719_010 Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_000056_250 Hb_000056_250 Hb_005496_090--Hb_000056_250 Hb_000016_170 Hb_000016_170 Hb_005496_090--Hb_000016_170 Hb_005496_090--Hb_138585_040 Hb_083380_010 Hb_083380_010 Hb_005496_090--Hb_083380_010 Hb_003291_020 Hb_003291_020 Hb_005496_090--Hb_003291_020 Hb_138585_040--Hb_001172_100 Hb_138585_040--Hb_000384_120 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38103 1.14237 2.44174 19.5184 2.14303 3.02127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4056 26.4919 13.299 4.18519 6.80835

CAGE analysis