Hb_001195_490

Information

Type -
Description -
Location Contig1195: 307879-312809
Sequence    

Annotation

kegg
ID gmx:100796810
description uncharacterized LOC100796810
nr
ID KHN12463.1
description hypothetical protein glysoja_018593 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2PXI2
description Uncharacterized protein OS=Glycine soja GN=glysoja_018593 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05843: 307897-312604
cDNA
(Sanger)
(ID:Location)		 008_M24.ab1: 307897-312595 , 038_M21.ab1: 307927-312604 , 044_J11.ab1: 307897-312594

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_490 0.0 - - hypothetical protein glysoja_018593 [Glycine soja]
2 Hb_000260_790 0.1153037256 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
3 Hb_001935_150 0.1587358538 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
4 Hb_000049_050 0.1589509859 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
5 Hb_000975_230 0.1593794641 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
6 Hb_002631_260 0.1710625454 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
7 Hb_077399_010 0.1713087804 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
8 Hb_000174_040 0.1832636458 - - -
9 Hb_002809_150 0.1847951494 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
10 Hb_006538_140 0.185111907 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
11 Hb_005167_030 0.1906175786 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
12 Hb_003777_040 0.1933687207 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
13 Hb_000025_240 0.1938892966 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
14 Hb_000016_170 0.1941336714 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002740_010 0.1947042384 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
16 Hb_001638_240 0.1958101312 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
17 Hb_003663_070 0.1966574303 - - -
18 Hb_007943_190 0.1976643545 - - cytoplasmic dynein light chain, putative [Ricinus communis]
19 Hb_027751_060 0.1999608319 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
20 Hb_027760_020 0.2001890268 - - hypothetical protein M569_04462, partial [Genlisea aurea]

Gene co-expression network

sample Hb_001195_490 Hb_001195_490 Hb_000260_790 Hb_000260_790 Hb_001195_490--Hb_000260_790 Hb_001935_150 Hb_001935_150 Hb_001195_490--Hb_001935_150 Hb_000049_050 Hb_000049_050 Hb_001195_490--Hb_000049_050 Hb_000975_230 Hb_000975_230 Hb_001195_490--Hb_000975_230 Hb_002631_260 Hb_002631_260 Hb_001195_490--Hb_002631_260 Hb_077399_010 Hb_077399_010 Hb_001195_490--Hb_077399_010 Hb_000260_790--Hb_077399_010 Hb_000260_790--Hb_000049_050 Hb_000260_790--Hb_002631_260 Hb_000260_790--Hb_000975_230 Hb_138585_040 Hb_138585_040 Hb_000260_790--Hb_138585_040 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_001935_150--Hb_002631_260 Hb_000049_050--Hb_138585_040 Hb_000049_050--Hb_002631_260 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_001172_100 Hb_001172_100 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070 Hb_000445_490 Hb_000445_490 Hb_000975_230--Hb_000445_490 Hb_003777_040 Hb_003777_040 Hb_000975_230--Hb_003777_040 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_002631_260--Hb_138585_040 Hb_002324_010 Hb_002324_010 Hb_002631_260--Hb_002324_010 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040 Hb_077399_010--Hb_002324_010 Hb_077399_010--Hb_000049_050 Hb_077399_010--Hb_002631_260 Hb_005496_090 Hb_005496_090 Hb_077399_010--Hb_005496_090 Hb_077399_010--Hb_138585_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35013 0.0780474 1.51174 58.1631 2.23588 20.975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.1161 74.8565 42.726 14.812 24.1607

CAGE analysis