Hb_001638_240

Information

Type -
Description -
Location Contig1638: 184189-184425
Sequence    

Annotation

kegg
ID vvi:100262493
description uncharacterized LOC100262493
nr
ID XP_002265589.1
description PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID E0CQN0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15380 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC100262493

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15011: 183974-186719 , PASA_asmbl_15012: 184603-184856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_240 0.0 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
2 Hb_003663_070 0.1157881176 - - -
3 Hb_001935_150 0.1198280143 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
4 Hb_004659_060 0.1245463672 - - RAS-related GTP-binding family protein [Populus trichocarpa]
5 Hb_002843_210 0.1249017274 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
6 Hb_005588_070 0.1277562541 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
7 Hb_000672_120 0.1282677183 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
8 Hb_014834_030 0.1305592226 - - -
9 Hb_000025_240 0.1344844494 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
10 Hb_000313_010 0.1356890944 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_000976_250 0.1364577845 - - -
12 Hb_000224_120 0.1383648429 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
13 Hb_009372_030 0.1398247912 - - 50S ribosomal protein L6, putative [Ricinus communis]
14 Hb_002025_300 0.1400284105 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
15 Hb_010449_040 0.145282229 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
16 Hb_005914_200 0.1472464978 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
17 Hb_000297_040 0.1483663013 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
18 Hb_001008_090 0.1492392164 - - cytochrome C oxidase, putative [Ricinus communis]
19 Hb_020419_020 0.1502329014 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
20 Hb_003561_030 0.1512828782 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_240 Hb_001638_240 Hb_003663_070 Hb_003663_070 Hb_001638_240--Hb_003663_070 Hb_001935_150 Hb_001935_150 Hb_001638_240--Hb_001935_150 Hb_004659_060 Hb_004659_060 Hb_001638_240--Hb_004659_060 Hb_002843_210 Hb_002843_210 Hb_001638_240--Hb_002843_210 Hb_005588_070 Hb_005588_070 Hb_001638_240--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_001638_240--Hb_000672_120 Hb_003663_070--Hb_000672_120 Hb_014834_030 Hb_014834_030 Hb_003663_070--Hb_014834_030 Hb_001953_090 Hb_001953_090 Hb_003663_070--Hb_001953_090 Hb_000322_140 Hb_000322_140 Hb_003663_070--Hb_000322_140 Hb_002878_010 Hb_002878_010 Hb_003663_070--Hb_002878_010 Hb_001935_150--Hb_014834_030 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_001008_090 Hb_001008_090 Hb_004659_060--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050 Hb_003561_030 Hb_003561_030 Hb_002843_210--Hb_003561_030 Hb_000367_210 Hb_000367_210 Hb_002843_210--Hb_000367_210 Hb_187083_010 Hb_187083_010 Hb_002843_210--Hb_187083_010 Hb_002843_210--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_002843_210--Hb_002025_300 Hb_075359_010 Hb_075359_010 Hb_002843_210--Hb_075359_010 Hb_004336_050 Hb_004336_050 Hb_005588_070--Hb_004336_050 Hb_012675_070 Hb_012675_070 Hb_005588_070--Hb_012675_070 Hb_180301_010 Hb_180301_010 Hb_005588_070--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_005588_070--Hb_001504_080 Hb_005588_070--Hb_000672_120 Hb_005588_070--Hb_002878_010 Hb_000672_120--Hb_004336_050 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.015 27.6642 46.2056 257.682 34.6896 300.596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
354.756 632.144 482.812 81.6795 96.0706

CAGE analysis