Hb_009372_030

Information

Type -
Description -
Location Contig9372: 65379-65687
Sequence    

Annotation

kegg
ID rcu:RCOM_0174250
description 50S ribosomal protein L6, putative
nr
ID XP_002527470.1
description 50S ribosomal protein L6, putative [Ricinus communis]
swissprot
ID P26861
description 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2
trembl
ID A0A067LIJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16278 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63020: 64653-65925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009372_030 0.0 - - 50S ribosomal protein L6, putative [Ricinus communis]
2 Hb_076175_010 0.0867576331 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
3 Hb_001935_150 0.122876246 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
4 Hb_002025_300 0.1333957266 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
5 Hb_010449_040 0.1383289726 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
6 Hb_001638_240 0.1398247912 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
7 Hb_004659_060 0.1409657226 - - RAS-related GTP-binding family protein [Populus trichocarpa]
8 Hb_000648_020 0.1429972069 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
9 Hb_000025_240 0.1449593339 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
10 Hb_005914_200 0.1464442311 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
11 Hb_075359_010 0.1495340903 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_000224_120 0.1502576518 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
13 Hb_003117_010 0.1510728302 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
14 Hb_042710_010 0.1523472031 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_000672_120 0.1528414309 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
16 Hb_103118_020 0.1541819271 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
17 Hb_000707_020 0.1553695389 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
18 Hb_001296_030 0.1565872333 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
19 Hb_000297_040 0.1567468759 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
20 Hb_012490_050 0.1570366563 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]

Gene co-expression network

sample Hb_009372_030 Hb_009372_030 Hb_076175_010 Hb_076175_010 Hb_009372_030--Hb_076175_010 Hb_001935_150 Hb_001935_150 Hb_009372_030--Hb_001935_150 Hb_002025_300 Hb_002025_300 Hb_009372_030--Hb_002025_300 Hb_010449_040 Hb_010449_040 Hb_009372_030--Hb_010449_040 Hb_001638_240 Hb_001638_240 Hb_009372_030--Hb_001638_240 Hb_004659_060 Hb_004659_060 Hb_009372_030--Hb_004659_060 Hb_076175_010--Hb_001935_150 Hb_030982_020 Hb_030982_020 Hb_076175_010--Hb_030982_020 Hb_002482_040 Hb_002482_040 Hb_076175_010--Hb_002482_040 Hb_002078_260 Hb_002078_260 Hb_076175_010--Hb_002078_260 Hb_076175_010--Hb_010449_040 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001935_150--Hb_001638_240 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_000648_020 Hb_000648_020 Hb_002025_300--Hb_000648_020 Hb_006718_010 Hb_006718_010 Hb_002025_300--Hb_006718_010 Hb_005914_200 Hb_005914_200 Hb_002025_300--Hb_005914_200 Hb_002843_210 Hb_002843_210 Hb_002025_300--Hb_002843_210 Hb_012539_020 Hb_012539_020 Hb_002025_300--Hb_012539_020 Hb_002025_300--Hb_000025_240 Hb_010449_040--Hb_001638_240 Hb_000224_120 Hb_000224_120 Hb_010449_040--Hb_000224_120 Hb_007100_030 Hb_007100_030 Hb_010449_040--Hb_007100_030 Hb_029866_070 Hb_029866_070 Hb_010449_040--Hb_029866_070 Hb_005588_070 Hb_005588_070 Hb_010449_040--Hb_005588_070 Hb_003663_070 Hb_003663_070 Hb_001638_240--Hb_003663_070 Hb_001638_240--Hb_004659_060 Hb_001638_240--Hb_002843_210 Hb_001638_240--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_001638_240--Hb_000672_120 Hb_001008_090 Hb_001008_090 Hb_004659_060--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.2852 2.82675 4.7323 67.9316 13.9356 82.2097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.0422 156.888 107.125 66.1264 23.6445

CAGE analysis