Hb_076175_010

Information

Type -
Description -
Location Contig76175: 185-1009
Sequence    

Annotation

kegg
ID cmo:103504157
description DNA-directed RNA polymerase II subunit RPB7
nr
ID XP_008466851.1
description PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
swissprot
ID P46279
description DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1
trembl
ID A0A067L9T2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05475 PE=4 SV=1
Gene Ontology
ID GO:0005665
description dna-directed rna polymerase ii non-catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076175_010 0.0 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
2 Hb_009372_030 0.0867576331 - - 50S ribosomal protein L6, putative [Ricinus communis]
3 Hb_001935_150 0.1284809592 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
4 Hb_030982_020 0.1391206782 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
5 Hb_002482_040 0.1478340815 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
6 Hb_002078_260 0.1489342194 - - unknown [Populus trichocarpa]
7 Hb_010449_040 0.154758835 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
8 Hb_135940_010 0.155264361 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
9 Hb_007894_230 0.1570018265 - - 30S ribosomal protein S14, putative [Ricinus communis]
10 Hb_001638_240 0.1590419843 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
11 Hb_000297_040 0.1621522341 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
12 Hb_004659_060 0.1673202059 - - RAS-related GTP-binding family protein [Populus trichocarpa]
13 Hb_098852_010 0.1680751917 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_042710_010 0.1688298472 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_007054_010 0.1744852022 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
16 Hb_002631_260 0.1756088682 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
17 Hb_021596_080 0.1758005394 - - 50S ribosomal protein L33A [Hevea brasiliensis]
18 Hb_005588_070 0.1761011062 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
19 Hb_172706_030 0.177266397 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
20 Hb_000224_120 0.1784137452 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]

Gene co-expression network

sample Hb_076175_010 Hb_076175_010 Hb_009372_030 Hb_009372_030 Hb_076175_010--Hb_009372_030 Hb_001935_150 Hb_001935_150 Hb_076175_010--Hb_001935_150 Hb_030982_020 Hb_030982_020 Hb_076175_010--Hb_030982_020 Hb_002482_040 Hb_002482_040 Hb_076175_010--Hb_002482_040 Hb_002078_260 Hb_002078_260 Hb_076175_010--Hb_002078_260 Hb_010449_040 Hb_010449_040 Hb_076175_010--Hb_010449_040 Hb_009372_030--Hb_001935_150 Hb_002025_300 Hb_002025_300 Hb_009372_030--Hb_002025_300 Hb_009372_030--Hb_010449_040 Hb_001638_240 Hb_001638_240 Hb_009372_030--Hb_001638_240 Hb_004659_060 Hb_004659_060 Hb_009372_030--Hb_004659_060 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001935_150--Hb_001638_240 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_030982_020--Hb_002078_260 Hb_011214_100 Hb_011214_100 Hb_030982_020--Hb_011214_100 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_030982_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_002482_040--Hb_001638_240 Hb_005588_070 Hb_005588_070 Hb_002482_040--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_002482_040--Hb_000672_120 Hb_002482_040--Hb_030982_020 Hb_000174_040 Hb_000174_040 Hb_002482_040--Hb_000174_040 Hb_002078_260--Hb_007894_230 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_010449_040--Hb_001638_240 Hb_000224_120 Hb_000224_120 Hb_010449_040--Hb_000224_120 Hb_007100_030 Hb_007100_030 Hb_010449_040--Hb_007100_030 Hb_029866_070 Hb_029866_070 Hb_010449_040--Hb_029866_070 Hb_010449_040--Hb_005588_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68032 1.49023 6.70515 78.4477 8.53168 81.3598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.5431 104.694 88.1261 49.8542 18.4521

CAGE analysis