Hb_011214_100

Information

Type -
Description -
Location Contig11214: 90292-90564
Sequence    

Annotation

kegg
ID rcu:RCOM_0753040
description hypothetical protein
nr
ID XP_012070889.1
description PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9STZ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0753040 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03658: 90046-91541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_100 0.0 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
2 Hb_001396_250 0.1131961311 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
3 Hb_030982_020 0.1142670177 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
4 Hb_132180_010 0.1164062493 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
5 Hb_002078_260 0.1178081395 - - unknown [Populus trichocarpa]
6 Hb_000015_070 0.1277502469 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
7 Hb_000342_160 0.1307483427 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
8 Hb_000671_120 0.131342109 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
9 Hb_011037_020 0.1314012435 - - unknown [Picea sitchensis]
10 Hb_002784_070 0.132900929 - - BnaUnng01470D [Brassica napus]
11 Hb_000635_070 0.1329733755 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
12 Hb_082006_010 0.1351473738 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009270_030 0.1363347227 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
14 Hb_098852_010 0.1407285428 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
15 Hb_041205_010 0.143248686 - - conserved hypothetical protein [Ricinus communis]
16 Hb_025288_010 0.147016924 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
17 Hb_011512_050 0.1477036447 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
18 Hb_029142_020 0.1500760166 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
19 Hb_004669_030 0.1503392794 - - -
20 Hb_000340_520 0.1526958169 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]

Gene co-expression network

sample Hb_011214_100 Hb_011214_100 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_030982_020 Hb_030982_020 Hb_011214_100--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_011214_100--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160 Hb_001396_250--Hb_000015_070 Hb_166480_010 Hb_166480_010 Hb_001396_250--Hb_166480_010 Hb_012675_080 Hb_012675_080 Hb_001396_250--Hb_012675_080 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_030982_020--Hb_002078_260 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_030982_020--Hb_041205_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_132180_010--Hb_002078_260 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_001220_010 Hb_001220_010 Hb_132180_010--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_000015_070--Hb_166480_010 Hb_000015_070--Hb_012675_080 Hb_000342_160--Hb_000671_120 Hb_000342_160--Hb_000635_070 Hb_000342_160--Hb_082006_010 Hb_000125_010 Hb_000125_010 Hb_000342_160--Hb_000125_010 Hb_000342_160--Hb_004669_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.8863 5.40852 6.77003 126.611 15.9249 129.214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8358 69.9635 42.5327 30.8921 10.5067

CAGE analysis