Hb_000342_160

Information

Type -
Description -
Location Contig342: 192038-192325
Sequence    

Annotation

kegg
ID csv:101226980
description uncharacterized LOC101226980
nr
ID XP_012077327.1
description PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
swissprot
ID Q9UQ35
description Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2
trembl
ID A0A067KD23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07697 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35755: 191803-192767
cDNA
(Sanger)
(ID:Location)		 013_I11.ab1: 191904-192728 , 022_P04.ab1: 191904-192728 , 024_H17.ab1: 191864-192734 , 030_B17.ab1: 191904-192728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_160 0.0 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
2 Hb_000671_120 0.1191088858 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
3 Hb_000635_070 0.1241927643 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
4 Hb_011214_100 0.1307483427 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
5 Hb_082006_010 0.1314138274 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000125_010 0.1340673124 transcription factor TF Family: mTERF -
7 Hb_004669_030 0.1346767583 - - -
8 Hb_001747_030 0.1410552936 - - hypothetical protein F383_08210 [Gossypium arboreum]
9 Hb_089202_010 0.1448290329 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
10 Hb_002562_110 0.148230225 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
11 Hb_000340_520 0.1485506197 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
12 Hb_000481_050 0.1498781713 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
13 Hb_000015_070 0.1537956827 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
14 Hb_001220_010 0.1550006756 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
15 Hb_002192_090 0.1560988666 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
16 Hb_002078_260 0.1579492447 - - unknown [Populus trichocarpa]
17 Hb_000125_020 0.1584085488 transcription factor TF Family: mTERF -
18 Hb_001163_040 0.1621266855 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
19 Hb_002259_160 0.163554932 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
20 Hb_003371_170 0.1650583857 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000342_160 Hb_000342_160 Hb_000671_120 Hb_000671_120 Hb_000342_160--Hb_000671_120 Hb_000635_070 Hb_000635_070 Hb_000342_160--Hb_000635_070 Hb_011214_100 Hb_011214_100 Hb_000342_160--Hb_011214_100 Hb_082006_010 Hb_082006_010 Hb_000342_160--Hb_082006_010 Hb_000125_010 Hb_000125_010 Hb_000342_160--Hb_000125_010 Hb_004669_030 Hb_004669_030 Hb_000342_160--Hb_004669_030 Hb_000671_120--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000671_120--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_000671_120--Hb_001220_010 Hb_001233_020 Hb_001233_020 Hb_000671_120--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_000635_070--Hb_004669_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_000635_070--Hb_002562_110 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_030982_020 Hb_030982_020 Hb_011214_100--Hb_030982_020 Hb_011214_100--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_082006_010--Hb_002562_110 Hb_082006_010--Hb_009270_030 Hb_082006_010--Hb_002078_260 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_000125_010--Hb_082006_010 Hb_001747_030 Hb_001747_030 Hb_000125_010--Hb_001747_030 Hb_002735_050 Hb_002735_050 Hb_000125_010--Hb_002735_050 Hb_003352_040 Hb_003352_040 Hb_000125_010--Hb_003352_040 Hb_002259_160 Hb_002259_160 Hb_000125_010--Hb_002259_160 Hb_001268_050 Hb_001268_050 Hb_000125_010--Hb_001268_050 Hb_004669_030--Hb_001233_020 Hb_004669_030--Hb_132180_010 Hb_004669_030--Hb_001220_010 Hb_004669_030--Hb_002562_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.618 49.7014 49.6533 614.557 105.829 427.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
130.594 303.365 200.693 76.6744 56.8156

CAGE analysis