Hb_000015_070

Information

Type -
Description -
Location Contig15: 62735-63894
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22690g
description POPTRDRAFT_844903; hypothetical protein
nr
ID XP_002298283.2
description hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GI11
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s22690g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_070 0.0 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
2 Hb_001396_250 0.0865252283 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
3 Hb_003371_170 0.1117949817 - - conserved hypothetical protein [Ricinus communis]
4 Hb_108227_010 0.1207890788 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
5 Hb_166480_010 0.1270778383 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
6 Hb_011214_100 0.1277502469 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
7 Hb_012675_080 0.1279638258 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
8 Hb_000635_070 0.1381249239 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
9 Hb_002784_070 0.1381449893 - - BnaUnng01470D [Brassica napus]
10 Hb_007763_050 0.1411237648 - - hypothetical protein L484_012752 [Morus notabilis]
11 Hb_002168_010 0.1430218584 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
12 Hb_007188_020 0.1448407237 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
13 Hb_152554_010 0.146117109 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
14 Hb_010504_030 0.1466489826 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
15 Hb_000671_120 0.1479467101 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
16 Hb_000136_180 0.1491659952 - - ribosomal protein S28, putative [Ricinus communis]
17 Hb_004669_030 0.1495154981 - - -
18 Hb_000007_460 0.1509050744 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
19 Hb_082006_010 0.1531183643 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000342_160 0.1537956827 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_000015_070 Hb_000015_070 Hb_001396_250 Hb_001396_250 Hb_000015_070--Hb_001396_250 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_000015_070--Hb_012675_080 Hb_001396_250--Hb_011214_100 Hb_001396_250--Hb_166480_010 Hb_001396_250--Hb_012675_080 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_006663_090 Hb_006663_090 Hb_003371_170--Hb_006663_090 Hb_106415_010 Hb_106415_010 Hb_003371_170--Hb_106415_010 Hb_003371_170--Hb_108227_010 Hb_076875_020 Hb_076875_020 Hb_003371_170--Hb_076875_020 Hb_068014_010 Hb_068014_010 Hb_003371_170--Hb_068014_010 Hb_108227_010--Hb_001396_250 Hb_108227_010--Hb_012675_080 Hb_000789_150 Hb_000789_150 Hb_108227_010--Hb_000789_150 Hb_013394_100 Hb_013394_100 Hb_108227_010--Hb_013394_100 Hb_002482_060 Hb_002482_060 Hb_166480_010--Hb_002482_060 Hb_000120_190 Hb_000120_190 Hb_166480_010--Hb_000120_190 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_030982_020 Hb_030982_020 Hb_011214_100--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_011214_100--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_011214_100--Hb_002078_260 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.5515 25.6365 24.365 248.373 25.5516 297.873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.6351 114.773 39.3241 35.8047 19.3691

CAGE analysis