Hb_106415_010

Information

Type -
Description -
Location Contig106415: 23-834
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012082212.1
description PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16415 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02026: 634-951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106415_010 0.0 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
2 Hb_099878_050 0.1098802989 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
3 Hb_033385_010 0.1160268368 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
4 Hb_007083_020 0.1288382392 - - hypothetical protein F775_15403 [Aegilops tauschii]
5 Hb_019053_010 0.129048207 - - -
6 Hb_007333_040 0.1303286237 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
7 Hb_000825_030 0.1304176914 - - zinc binding dehydrogenase, putative [Ricinus communis]
8 Hb_181328_010 0.1314187315 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_006663_090 0.1319124772 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
10 Hb_068014_010 0.1343688269 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
11 Hb_001623_300 0.1353089013 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
12 Hb_000074_060 0.1374484969 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
13 Hb_003371_170 0.1376138902 - - conserved hypothetical protein [Ricinus communis]
14 Hb_051424_010 0.1403926801 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
15 Hb_183522_010 0.1440654648 - - Far upstream element-binding protein, putative [Ricinus communis]
16 Hb_000053_030 0.1442368944 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
17 Hb_009119_020 0.1445210003 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
18 Hb_001623_290 0.1450757242 - - unknown [Populus trichocarpa]
19 Hb_075764_010 0.1465545318 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
20 Hb_013358_090 0.148743109 - - hypothetical protein Csa_4G652025 [Cucumis sativus]

Gene co-expression network

sample Hb_106415_010 Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_033385_010--Hb_007333_040 Hb_068014_010 Hb_068014_010 Hb_033385_010--Hb_068014_010 Hb_009119_020 Hb_009119_020 Hb_033385_010--Hb_009119_020 Hb_033385_010--Hb_099878_050 Hb_033385_010--Hb_013358_090 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_007083_020--Hb_068014_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_019053_010--Hb_068014_010 Hb_019053_010--Hb_009119_020 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_115477_010 Hb_115477_010 Hb_019053_010--Hb_115477_010 Hb_003633_040 Hb_003633_040 Hb_019053_010--Hb_003633_040 Hb_007333_040--Hb_009119_020 Hb_054586_020 Hb_054586_020 Hb_007333_040--Hb_054586_020 Hb_181328_010 Hb_181328_010 Hb_007333_040--Hb_181328_010 Hb_007333_040--Hb_019053_010 Hb_006663_090 Hb_006663_090 Hb_000825_030--Hb_006663_090 Hb_038237_010 Hb_038237_010 Hb_000825_030--Hb_038237_010 Hb_006487_060 Hb_006487_060 Hb_000825_030--Hb_006487_060 Hb_000991_070 Hb_000991_070 Hb_000825_030--Hb_000991_070 Hb_152554_010 Hb_152554_010 Hb_000825_030--Hb_152554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7181 32.4187 27.6516 151.804 40.6716 196.486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.3923 28.97 15.2674 43.4344 22.592

CAGE analysis