Hb_019053_010

Information

Type -
Description -
Location Contig19053: 9155-16236
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18996: 15991-29221
cDNA
(Sanger)
(ID:Location)		 012_I21.ab1: 15991-24316 , 030_J13.ab1: 15991-24282 , 035_G01.ab1: 16004-23691

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019053_010 0.0 - - -
2 Hb_068014_010 0.1287800097 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
3 Hb_106415_010 0.129048207 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
4 Hb_009119_020 0.1373925548 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
5 Hb_000074_060 0.140185695 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
6 Hb_115477_010 0.1443285789 - - Protein dom-3, putative [Ricinus communis]
7 Hb_003633_040 0.1469036622 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
8 Hb_003371_170 0.1487285226 - - conserved hypothetical protein [Ricinus communis]
9 Hb_168973_010 0.1493327235 - - -
10 Hb_076875_020 0.1516113686 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
11 Hb_007083_020 0.1557941862 - - hypothetical protein F775_15403 [Aegilops tauschii]
12 Hb_148079_010 0.1563932072 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
13 Hb_001623_290 0.1566341886 - - unknown [Populus trichocarpa]
14 Hb_006663_090 0.1581151375 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
15 Hb_007333_040 0.1585889303 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
16 Hb_099878_050 0.1615443983 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
17 Hb_152554_010 0.1617232904 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
18 Hb_038237_010 0.1628301392 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
19 Hb_007188_020 0.1633031795 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
20 Hb_001623_300 0.1680812382 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]

Gene co-expression network

sample Hb_019053_010 Hb_019053_010 Hb_068014_010 Hb_068014_010 Hb_019053_010--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_019053_010--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_019053_010--Hb_009119_020 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_115477_010 Hb_115477_010 Hb_019053_010--Hb_115477_010 Hb_003633_040 Hb_003633_040 Hb_019053_010--Hb_003633_040 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_068014_010--Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_106415_010--Hb_007083_020 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_009119_020--Hb_007333_040 Hb_009119_020--Hb_115477_010 Hb_009119_020--Hb_106415_010 Hb_051437_010 Hb_051437_010 Hb_009119_020--Hb_051437_010 Hb_009119_020--Hb_033385_010 Hb_005527_020 Hb_005527_020 Hb_000074_060--Hb_005527_020 Hb_000329_560 Hb_000329_560 Hb_000074_060--Hb_000329_560 Hb_168973_010 Hb_168973_010 Hb_000074_060--Hb_168973_010 Hb_002562_110 Hb_002562_110 Hb_000074_060--Hb_002562_110 Hb_000074_060--Hb_106415_010 Hb_129672_010 Hb_129672_010 Hb_000074_060--Hb_129672_010 Hb_115107_010 Hb_115107_010 Hb_115477_010--Hb_115107_010 Hb_115477_010--Hb_168973_010 Hb_115477_010--Hb_006663_090 Hb_007026_040 Hb_007026_040 Hb_115477_010--Hb_007026_040 Hb_001386_140 Hb_001386_140 Hb_115477_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_115477_010--Hb_010565_010 Hb_003633_040--Hb_115107_010 Hb_076875_020 Hb_076875_020 Hb_003633_040--Hb_076875_020 Hb_002110_040 Hb_002110_040 Hb_003633_040--Hb_002110_040 Hb_003633_040--Hb_115477_010 Hb_000850_040 Hb_000850_040 Hb_003633_040--Hb_000850_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10815 3.11847 5.52153 23.548 8.44748 41.2527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86615 7.4149 6.38538 12.7158 1.93423

CAGE analysis