Hb_033385_010

Information

Type -
Description -
Location Contig33385: 5-632
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID KDP37038.1
description hypothetical protein JCGZ_06094 [Jatropha curcas]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID A0A067KPU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06094 PE=4 SV=1
Gene Ontology
ID GO:0005886
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033385_010 0.0 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
2 Hb_007333_040 0.0863804952 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
3 Hb_106415_010 0.1160268368 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
4 Hb_068014_010 0.1476422859 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
5 Hb_009119_020 0.1559611942 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
6 Hb_099878_050 0.1585282285 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
7 Hb_013358_090 0.1625521865 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
8 Hb_183522_010 0.1675831213 - - Far upstream element-binding protein, putative [Ricinus communis]
9 Hb_181328_010 0.1676667009 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_007083_020 0.1684185152 - - hypothetical protein F775_15403 [Aegilops tauschii]
11 Hb_019053_010 0.1718997132 - - -
12 Hb_068569_010 0.1727493065 - - -
13 Hb_000053_030 0.181308605 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
14 Hb_054586_020 0.1877775833 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
15 Hb_077573_010 0.1913658279 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_060391_010 0.1914007165 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_001623_300 0.1922336323 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
18 Hb_081517_010 0.1930691149 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
19 Hb_000082_020 0.1940226139 - - -
20 Hb_000825_030 0.1961112697 - - zinc binding dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_033385_010 Hb_033385_010 Hb_007333_040 Hb_007333_040 Hb_033385_010--Hb_007333_040 Hb_106415_010 Hb_106415_010 Hb_033385_010--Hb_106415_010 Hb_068014_010 Hb_068014_010 Hb_033385_010--Hb_068014_010 Hb_009119_020 Hb_009119_020 Hb_033385_010--Hb_009119_020 Hb_099878_050 Hb_099878_050 Hb_033385_010--Hb_099878_050 Hb_013358_090 Hb_013358_090 Hb_033385_010--Hb_013358_090 Hb_007333_040--Hb_106415_010 Hb_007333_040--Hb_009119_020 Hb_054586_020 Hb_054586_020 Hb_007333_040--Hb_054586_020 Hb_181328_010 Hb_181328_010 Hb_007333_040--Hb_181328_010 Hb_019053_010 Hb_019053_010 Hb_007333_040--Hb_019053_010 Hb_106415_010--Hb_099878_050 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_106415_010--Hb_019053_010 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_068014_010--Hb_007083_020 Hb_068014_010--Hb_019053_010 Hb_068014_010--Hb_106415_010 Hb_009119_020--Hb_019053_010 Hb_115477_010 Hb_115477_010 Hb_009119_020--Hb_115477_010 Hb_009119_020--Hb_106415_010 Hb_051437_010 Hb_051437_010 Hb_009119_020--Hb_051437_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_013358_090--Hb_181328_010 Hb_013358_080 Hb_013358_080 Hb_013358_090--Hb_013358_080 Hb_000053_030 Hb_000053_030 Hb_013358_090--Hb_000053_030 Hb_002027_180 Hb_002027_180 Hb_013358_090--Hb_002027_180 Hb_004040_030 Hb_004040_030 Hb_013358_090--Hb_004040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.3841 52.8347 26.1288 259.979 47.1122 335.277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.0217 21.1396 15.7849 105.559 24.4873

CAGE analysis