Hb_013358_090

Information

Type -
Description -
Location Contig13358: 104705-105106
Sequence    

Annotation

kegg
ID -
description -
nr
ID KGN55437.1
description hypothetical protein Csa_4G652025 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0L4B0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652025 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09507: 103715-105620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_090 0.0 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
2 Hb_181328_010 0.1083180688 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_013358_080 0.1093322892 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
4 Hb_099878_050 0.1285497652 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
5 Hb_000053_030 0.1292330041 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
6 Hb_002027_180 0.1364009667 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
7 Hb_004040_030 0.1393486966 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
8 Hb_002611_020 0.1415880747 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
9 Hb_165402_010 0.1419593199 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
10 Hb_086765_010 0.1460324142 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
11 Hb_131035_010 0.1473620873 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_102591_010 0.1478112827 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
13 Hb_106415_010 0.148743109 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
14 Hb_000107_080 0.1487481731 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
15 Hb_077573_010 0.1529742823 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_181441_010 0.1543487754 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
17 Hb_012506_010 0.1546420282 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
18 Hb_088163_010 0.1549515974 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
19 Hb_000230_180 0.1582630202 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
20 Hb_004466_060 0.1587155547 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]

Gene co-expression network

sample Hb_013358_090 Hb_013358_090 Hb_181328_010 Hb_181328_010 Hb_013358_090--Hb_181328_010 Hb_013358_080 Hb_013358_080 Hb_013358_090--Hb_013358_080 Hb_099878_050 Hb_099878_050 Hb_013358_090--Hb_099878_050 Hb_000053_030 Hb_000053_030 Hb_013358_090--Hb_000053_030 Hb_002027_180 Hb_002027_180 Hb_013358_090--Hb_002027_180 Hb_004040_030 Hb_004040_030 Hb_013358_090--Hb_004040_030 Hb_002611_020 Hb_002611_020 Hb_181328_010--Hb_002611_020 Hb_002400_330 Hb_002400_330 Hb_181328_010--Hb_002400_330 Hb_106415_010 Hb_106415_010 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_050912_010 Hb_050912_010 Hb_181328_010--Hb_050912_010 Hb_081517_010 Hb_081517_010 Hb_013358_080--Hb_081517_010 Hb_013358_080--Hb_181328_010 Hb_001948_130 Hb_001948_130 Hb_013358_080--Hb_001948_130 Hb_111973_010 Hb_111973_010 Hb_013358_080--Hb_111973_010 Hb_074197_020 Hb_074197_020 Hb_013358_080--Hb_074197_020 Hb_099878_050--Hb_106415_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_002192_090 Hb_002192_090 Hb_000053_030--Hb_002192_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_000053_030--Hb_106415_010 Hb_000053_030--Hb_099878_050 Hb_003992_040 Hb_003992_040 Hb_002027_180--Hb_003992_040 Hb_002027_180--Hb_086765_010 Hb_026228_020 Hb_026228_020 Hb_002027_180--Hb_026228_020 Hb_001829_040 Hb_001829_040 Hb_002027_180--Hb_001829_040 Hb_004117_160 Hb_004117_160 Hb_002027_180--Hb_004117_160 Hb_007286_020 Hb_007286_020 Hb_004040_030--Hb_007286_020 Hb_003052_180 Hb_003052_180 Hb_004040_030--Hb_003052_180 Hb_000035_330 Hb_000035_330 Hb_004040_030--Hb_000035_330 Hb_143629_130 Hb_143629_130 Hb_004040_030--Hb_143629_130 Hb_002781_030 Hb_002781_030 Hb_004040_030--Hb_002781_030 Hb_000258_240 Hb_000258_240 Hb_004040_030--Hb_000258_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0716 12.2956 7.83937 45.7929 7.79747 34.4571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.856 4.65112 5.46738 15.198 10.918

CAGE analysis