Hb_003992_040

Information

Type -
Description -
Location Contig3992: 11050-11742
Sequence    

Annotation

kegg
ID cic:CICLE_v10026222mg
description hypothetical protein
nr
ID XP_007023205.1
description Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G9J4
description Post-illumination chlorophyll fluorescence increase isoform 5 OS=Theobroma cacao GN=TCM_027194 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39697: 9827-12790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_040 0.0 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
2 Hb_026228_020 0.131548586 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
3 Hb_002027_180 0.1323792408 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
4 Hb_001829_040 0.1376885321 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
5 Hb_002084_010 0.1481875879 - - hypothetical protein VITISV_017990 [Vitis vinifera]
6 Hb_012760_130 0.1496478448 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
7 Hb_000617_010 0.1518312579 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
8 Hb_004883_050 0.1526347041 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
9 Hb_003038_220 0.1543109851 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
10 Hb_005023_030 0.1554551215 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
11 Hb_000260_720 0.15573061 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
12 Hb_000260_600 0.1580335288 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003342_020 0.1615589555 - - calcineurin B, putative [Ricinus communis]
14 Hb_004228_100 0.1652750939 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
15 Hb_000008_220 0.1652826846 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
16 Hb_000637_140 0.1662995169 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
17 Hb_000608_260 0.1663477454 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
18 Hb_002192_090 0.1717451743 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
19 Hb_000116_150 0.1722977778 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
20 Hb_150023_010 0.1727599407 - - 50S ribosomal protein L2, putative [Ricinus communis]

Gene co-expression network

sample Hb_003992_040 Hb_003992_040 Hb_026228_020 Hb_026228_020 Hb_003992_040--Hb_026228_020 Hb_002027_180 Hb_002027_180 Hb_003992_040--Hb_002027_180 Hb_001829_040 Hb_001829_040 Hb_003992_040--Hb_001829_040 Hb_002084_010 Hb_002084_010 Hb_003992_040--Hb_002084_010 Hb_012760_130 Hb_012760_130 Hb_003992_040--Hb_012760_130 Hb_000617_010 Hb_000617_010 Hb_003992_040--Hb_000617_010 Hb_005023_030 Hb_005023_030 Hb_026228_020--Hb_005023_030 Hb_072922_010 Hb_072922_010 Hb_026228_020--Hb_072922_010 Hb_001018_130 Hb_001018_130 Hb_026228_020--Hb_001018_130 Hb_001018_110 Hb_001018_110 Hb_026228_020--Hb_001018_110 Hb_001318_200 Hb_001318_200 Hb_026228_020--Hb_001318_200 Hb_001135_140 Hb_001135_140 Hb_026228_020--Hb_001135_140 Hb_013358_090 Hb_013358_090 Hb_002027_180--Hb_013358_090 Hb_086765_010 Hb_086765_010 Hb_002027_180--Hb_086765_010 Hb_002027_180--Hb_026228_020 Hb_002027_180--Hb_001829_040 Hb_004117_160 Hb_004117_160 Hb_002027_180--Hb_004117_160 Hb_011671_480 Hb_011671_480 Hb_001829_040--Hb_011671_480 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_000260_720 Hb_000260_720 Hb_001829_040--Hb_000260_720 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_128998_010 Hb_128998_010 Hb_002084_010--Hb_128998_010 Hb_051424_010 Hb_051424_010 Hb_002084_010--Hb_051424_010 Hb_001386_140 Hb_001386_140 Hb_002084_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_002084_010--Hb_010565_010 Hb_112047_010 Hb_112047_010 Hb_002084_010--Hb_112047_010 Hb_004883_050 Hb_004883_050 Hb_012760_130--Hb_004883_050 Hb_000416_070 Hb_000416_070 Hb_012760_130--Hb_000416_070 Hb_007123_060 Hb_007123_060 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_001856_180 Hb_001856_180 Hb_000617_010--Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_000617_010--Hb_000345_160 Hb_120982_010 Hb_120982_010 Hb_000617_010--Hb_120982_010 Hb_000107_230 Hb_000107_230 Hb_000617_010--Hb_000107_230 Hb_010150_020 Hb_010150_020 Hb_000617_010--Hb_010150_020 Hb_004102_170 Hb_004102_170 Hb_000617_010--Hb_004102_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61774 3.63396 2.25567 5.63589 1.86627 6.12133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82481 2.15271 1.06423 0.652092 1.93423

CAGE analysis