Hb_001318_200

Information

Type -
Description -
Location Contig1318: 151910-152527
Sequence    

Annotation

kegg
ID rcu:RCOM_0495440
description hypothetical protein
nr
ID XP_012080215.1
description PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T188
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0495440 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_200 0.0 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
2 Hb_026228_020 0.1294512773 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
3 Hb_000207_100 0.1357361685 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
4 Hb_005023_030 0.1613006515 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
5 Hb_001318_190 0.1623914613 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
6 Hb_181810_020 0.1728534818 - - -
7 Hb_001135_140 0.1779775842 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
8 Hb_072922_010 0.1784138069 - - apolipoprotein d, putative [Ricinus communis]
9 Hb_005023_010 0.1873952369 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
10 Hb_001018_110 0.191200757 - - unnamed protein product [Coffea canephora]
11 Hb_002078_160 0.1917015292 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
12 Hb_000212_320 0.1953081837 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
13 Hb_009851_050 0.1969231738 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
14 Hb_001232_160 0.197801584 - - PREDICTED: protein SYS1 homolog [Gossypium raimondii]
15 Hb_000850_040 0.1980574036 - - conserved hypothetical protein [Ricinus communis]
16 Hb_126295_010 0.1981753166 - - PREDICTED: protein SEH1 [Jatropha curcas]
17 Hb_000031_150 0.1987661319 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
18 Hb_000008_220 0.1994387965 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
19 Hb_001018_130 0.2001764063 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
20 Hb_090051_030 0.2007233594 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_200 Hb_001318_200 Hb_026228_020 Hb_026228_020 Hb_001318_200--Hb_026228_020 Hb_000207_100 Hb_000207_100 Hb_001318_200--Hb_000207_100 Hb_005023_030 Hb_005023_030 Hb_001318_200--Hb_005023_030 Hb_001318_190 Hb_001318_190 Hb_001318_200--Hb_001318_190 Hb_181810_020 Hb_181810_020 Hb_001318_200--Hb_181810_020 Hb_001135_140 Hb_001135_140 Hb_001318_200--Hb_001135_140 Hb_026228_020--Hb_005023_030 Hb_072922_010 Hb_072922_010 Hb_026228_020--Hb_072922_010 Hb_001018_130 Hb_001018_130 Hb_026228_020--Hb_001018_130 Hb_001018_110 Hb_001018_110 Hb_026228_020--Hb_001018_110 Hb_026228_020--Hb_001135_140 Hb_000281_110 Hb_000281_110 Hb_000207_100--Hb_000281_110 Hb_000096_080 Hb_000096_080 Hb_000207_100--Hb_000096_080 Hb_000554_010 Hb_000554_010 Hb_000207_100--Hb_000554_010 Hb_002078_160 Hb_002078_160 Hb_000207_100--Hb_002078_160 Hb_000556_150 Hb_000556_150 Hb_000207_100--Hb_000556_150 Hb_000107_200 Hb_000107_200 Hb_005023_030--Hb_000107_200 Hb_005023_030--Hb_001135_140 Hb_001386_140 Hb_001386_140 Hb_005023_030--Hb_001386_140 Hb_002067_120 Hb_002067_120 Hb_005023_030--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_005023_030--Hb_010565_010 Hb_001318_190--Hb_000207_100 Hb_000008_220 Hb_000008_220 Hb_001318_190--Hb_000008_220 Hb_009851_050 Hb_009851_050 Hb_001318_190--Hb_009851_050 Hb_001318_190--Hb_000556_150 Hb_001318_190--Hb_181810_020 Hb_000031_150 Hb_000031_150 Hb_181810_020--Hb_000031_150 Hb_003050_390 Hb_003050_390 Hb_181810_020--Hb_003050_390 Hb_002232_100 Hb_002232_100 Hb_181810_020--Hb_002232_100 Hb_000229_040 Hb_000229_040 Hb_181810_020--Hb_000229_040 Hb_000592_080 Hb_000592_080 Hb_181810_020--Hb_000592_080 Hb_143629_210 Hb_143629_210 Hb_181810_020--Hb_143629_210 Hb_002110_040 Hb_002110_040 Hb_001135_140--Hb_002110_040 Hb_115107_010 Hb_115107_010 Hb_001135_140--Hb_115107_010 Hb_000359_140 Hb_000359_140 Hb_001135_140--Hb_000359_140 Hb_001135_140--Hb_002067_120 Hb_001135_140--Hb_001018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.406343 0.45952 0.255421 1.3505 0.715355 1.12221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.290341 0.342113 0.764996 0.0476312 0.210865

CAGE analysis