Hb_000281_110

Information

Type -
Description -
Location Contig281: 111810-117460
Sequence    

Annotation

kegg
ID rcu:RCOM_0342930
description RNA binding protein, putative
nr
ID XP_012080819.1
description PREDICTED: pumilio homolog 12 [Jatropha curcas]
swissprot
ID Q9LVC3
description Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
trembl
ID A0A067K6G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16188 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio homolog 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29351: 110654-110886 , PASA_asmbl_29353: 114781-117342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_110 0.0 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
2 Hb_000554_010 0.1108223689 - - transporter, putative [Ricinus communis]
3 Hb_003206_070 0.1175635897 - - organic anion transporter, putative [Ricinus communis]
4 Hb_003032_010 0.1177470766 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_001454_130 0.1201589376 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
6 Hb_001633_130 0.1233479873 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
7 Hb_000169_090 0.123953077 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
8 Hb_003195_070 0.125761673 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_002506_020 0.1259784787 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
10 Hb_000083_250 0.1264297362 - - ring finger protein, putative [Ricinus communis]
11 Hb_090051_030 0.1271419664 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
12 Hb_004223_190 0.1279238524 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
13 Hb_000479_200 0.1287162339 - - PREDICTED: uncharacterized protein LOC105644128 [Jatropha curcas]
14 Hb_000451_010 0.1289772487 - - secretory carrier membrane protein, putative [Ricinus communis]
15 Hb_005023_010 0.1294024584 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
16 Hb_000146_050 0.1294941448 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
17 Hb_002078_160 0.1296803361 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
18 Hb_003470_090 0.1314566807 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
19 Hb_002445_120 0.1315504927 - - secretory carrier membrane protein, putative [Ricinus communis]
20 Hb_024714_100 0.1316128001 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000281_110 Hb_000281_110 Hb_000554_010 Hb_000554_010 Hb_000281_110--Hb_000554_010 Hb_003206_070 Hb_003206_070 Hb_000281_110--Hb_003206_070 Hb_003032_010 Hb_003032_010 Hb_000281_110--Hb_003032_010 Hb_001454_130 Hb_001454_130 Hb_000281_110--Hb_001454_130 Hb_001633_130 Hb_001633_130 Hb_000281_110--Hb_001633_130 Hb_000169_090 Hb_000169_090 Hb_000281_110--Hb_000169_090 Hb_004007_160 Hb_004007_160 Hb_000554_010--Hb_004007_160 Hb_004705_040 Hb_004705_040 Hb_000554_010--Hb_004705_040 Hb_004375_130 Hb_004375_130 Hb_000554_010--Hb_004375_130 Hb_007479_050 Hb_007479_050 Hb_000554_010--Hb_007479_050 Hb_000649_050 Hb_000649_050 Hb_000554_010--Hb_000649_050 Hb_000409_020 Hb_000409_020 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_000676_250 Hb_000676_250 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_000069_110 Hb_000069_110 Hb_003032_010--Hb_000069_110 Hb_010655_010 Hb_010655_010 Hb_003032_010--Hb_010655_010 Hb_002687_110 Hb_002687_110 Hb_003032_010--Hb_002687_110 Hb_000479_200 Hb_000479_200 Hb_003032_010--Hb_000479_200 Hb_032264_110 Hb_032264_110 Hb_003032_010--Hb_032264_110 Hb_017110_010 Hb_017110_010 Hb_003032_010--Hb_017110_010 Hb_000083_250 Hb_000083_250 Hb_001454_130--Hb_000083_250 Hb_000630_050 Hb_000630_050 Hb_001454_130--Hb_000630_050 Hb_145314_010 Hb_145314_010 Hb_001454_130--Hb_145314_010 Hb_000808_280 Hb_000808_280 Hb_001454_130--Hb_000808_280 Hb_106724_020 Hb_106724_020 Hb_001454_130--Hb_106724_020 Hb_150986_010 Hb_150986_010 Hb_001454_130--Hb_150986_010 Hb_082821_010 Hb_082821_010 Hb_001633_130--Hb_082821_010 Hb_090051_030 Hb_090051_030 Hb_001633_130--Hb_090051_030 Hb_000146_050 Hb_000146_050 Hb_001633_130--Hb_000146_050 Hb_006455_120 Hb_006455_120 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_001633_130--Hb_003177_030 Hb_005054_100 Hb_005054_100 Hb_000169_090--Hb_005054_100 Hb_004046_020 Hb_004046_020 Hb_000169_090--Hb_004046_020 Hb_001344_010 Hb_001344_010 Hb_000169_090--Hb_001344_010 Hb_003195_070 Hb_003195_070 Hb_000169_090--Hb_003195_070 Hb_000898_040 Hb_000898_040 Hb_000169_090--Hb_000898_040 Hb_000169_090--Hb_003206_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.78843 0.528734 1.17174 3.62272 2.88156 2.88056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67632 1.71698 3.04511 0.798817 1.51229

CAGE analysis