Hb_001344_010

Information

Type -
Description -
Location Contig1344: 24324-26614
Sequence    

Annotation

kegg
ID rcu:RCOM_1396110
description zinc finger protein, putative
nr
ID XP_012074621.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
swissprot
ID Q8W468
description Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1
trembl
ID A0A067KI26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10446 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09755: 7941-27304 , PASA_asmbl_09756: 8594-24391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001344_010 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
2 Hb_005490_030 0.0565968093 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
3 Hb_023001_060 0.0645615414 - - PREDICTED: importin-11 [Jatropha curcas]
4 Hb_005054_100 0.0801165569 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
5 Hb_000169_090 0.0828127293 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
6 Hb_000700_110 0.0837247832 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_003777_310 0.0860253574 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003092_030 0.0879902948 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
9 Hb_000976_410 0.0888333509 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
10 Hb_148644_010 0.091022742 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_006198_080 0.0921587067 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
12 Hb_001009_170 0.0927262217 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_002740_180 0.0935696023 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000318_290 0.093578565 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
15 Hb_001635_060 0.0942139449 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
16 Hb_001266_080 0.0959727753 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
17 Hb_000898_040 0.0960125199 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_003697_030 0.0963123608 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
19 Hb_000656_110 0.0976284947 - - nucleolysin tia-1, putative [Ricinus communis]
20 Hb_002217_300 0.0991039964 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]

Gene co-expression network

sample Hb_001344_010 Hb_001344_010 Hb_005490_030 Hb_005490_030 Hb_001344_010--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_001344_010--Hb_023001_060 Hb_005054_100 Hb_005054_100 Hb_001344_010--Hb_005054_100 Hb_000169_090 Hb_000169_090 Hb_001344_010--Hb_000169_090 Hb_000700_110 Hb_000700_110 Hb_001344_010--Hb_000700_110 Hb_003777_310 Hb_003777_310 Hb_001344_010--Hb_003777_310 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_005490_030--Hb_023001_060 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005490_030--Hb_005054_100 Hb_023001_060--Hb_003777_310 Hb_023001_060--Hb_005054_100 Hb_003697_030 Hb_003697_030 Hb_023001_060--Hb_003697_030 Hb_000318_290 Hb_000318_290 Hb_023001_060--Hb_000318_290 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_005054_100--Hb_000169_090 Hb_004046_020 Hb_004046_020 Hb_000169_090--Hb_004046_020 Hb_003195_070 Hb_003195_070 Hb_000169_090--Hb_003195_070 Hb_000898_040 Hb_000898_040 Hb_000169_090--Hb_000898_040 Hb_003206_070 Hb_003206_070 Hb_000169_090--Hb_003206_070 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_002477_330 Hb_002477_330 Hb_000700_110--Hb_002477_330 Hb_003777_310--Hb_000318_290 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_000608_320 Hb_000608_320 Hb_003777_310--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_003777_310--Hb_004032_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0265 9.96978 5.09276 23.9601 23.6903 34.8292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1628 18.84 35.0188 19.9583 15.9513

CAGE analysis