Hb_002740_180

Information

Type -
Description -
Location Contig2740: 212746-220778
Sequence    

Annotation

kegg
ID rcu:RCOM_1437180
description hypothetical protein
nr
ID XP_002512601.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8BG09
description Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1
trembl
ID B9RFT2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28683: 212748-214019 , PASA_asmbl_28686: 217707-218395 , PASA_asmbl_28687: 220335-220661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005054_100 0.059519477 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
3 Hb_000185_040 0.0632001927 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
4 Hb_054865_150 0.0660288492 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
5 Hb_000254_090 0.0719684281 - - PREDICTED: la protein 2 [Jatropha curcas]
6 Hb_000318_290 0.0725099301 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_000028_480 0.0727592955 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
8 Hb_012022_090 0.0741281552 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
9 Hb_005490_030 0.0744583499 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
10 Hb_002027_290 0.0754871415 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
11 Hb_001341_170 0.0760735928 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
12 Hb_002942_100 0.0763666192 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
13 Hb_000172_290 0.0765259964 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
14 Hb_001198_100 0.0771440111 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
15 Hb_000028_280 0.0776909398 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
16 Hb_007479_040 0.0777502494 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001696_010 0.0788431749 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
18 Hb_000260_010 0.0806546297 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
19 Hb_005065_010 0.080673467 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
20 Hb_000999_050 0.0813482213 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002740_180 Hb_002740_180 Hb_005054_100 Hb_005054_100 Hb_002740_180--Hb_005054_100 Hb_000185_040 Hb_000185_040 Hb_002740_180--Hb_000185_040 Hb_054865_150 Hb_054865_150 Hb_002740_180--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_002740_180--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_002740_180--Hb_000318_290 Hb_000028_480 Hb_000028_480 Hb_002740_180--Hb_000028_480 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_000169_090 Hb_000169_090 Hb_005054_100--Hb_000169_090 Hb_005490_030 Hb_005490_030 Hb_005054_100--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_005054_100--Hb_023001_060 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000185_040--Hb_000318_290 Hb_001341_170 Hb_001341_170 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_054865_150--Hb_000254_090 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000254_090--Hb_000156_010 Hb_000254_090--Hb_000172_290 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_002518_260 Hb_002518_260 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1368 11.5945 7.28277 16.3779 19.943 22.2254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5079 14.9914 23.5683 18.307 16.652

CAGE analysis