Hb_072922_010

Information

Type -
Description -
Location Contig72922: 12845-13979
Sequence    

Annotation

kegg
ID rcu:RCOM_0700620
description apolipoprotein d, putative
nr
ID XP_002523505.1
description apolipoprotein d, putative [Ricinus communis]
swissprot
ID Q46036
description Outer membrane lipoprotein Blc OS=Citrobacter freundii PE=3 SV=1
trembl
ID B9SBY6
description Apolipoprotein d, putative OS=Ricinus communis GN=RCOM_0700620 PE=4 SV=1
Gene Ontology
ID GO:0005215
description temperature-induced lipocalin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55912: 12831-13981 , PASA_asmbl_55913: 12883-13981 , PASA_asmbl_55914: 13272-13506
cDNA
(Sanger)
(ID:Location)		 002_N08.ab1: 12921-13780 , 004_C23.ab1: 12831-13679 , 030_L03.ab1: 12831-13568 , 034_I11.ab1: 12831-13651

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072922_010 0.0 - - apolipoprotein d, putative [Ricinus communis]
2 Hb_000300_630 0.0871044317 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
3 Hb_001018_110 0.0986991346 - - unnamed protein product [Coffea canephora]
4 Hb_002304_040 0.1043540658 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
5 Hb_005023_010 0.1104573814 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
6 Hb_004129_140 0.118106686 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
7 Hb_000146_040 0.1215931863 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
8 Hb_001747_030 0.1248375696 - - hypothetical protein F383_08210 [Gossypium arboreum]
9 Hb_001699_100 0.125424899 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
10 Hb_026228_020 0.1257313874 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
11 Hb_000370_020 0.1258183986 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004627_040 0.1266714396 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
13 Hb_005504_050 0.1281426229 - - putative protein [Arabidopsis thaliana]
14 Hb_000359_310 0.1292959904 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
15 Hb_000260_720 0.1296053852 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
16 Hb_003529_030 0.1304699518 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
17 Hb_000140_350 0.1310831848 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000836_280 0.1312155884 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
19 Hb_006618_120 0.1324292515 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
20 Hb_001191_110 0.1336140534 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]

Gene co-expression network

sample Hb_072922_010 Hb_072922_010 Hb_000300_630 Hb_000300_630 Hb_072922_010--Hb_000300_630 Hb_001018_110 Hb_001018_110 Hb_072922_010--Hb_001018_110 Hb_002304_040 Hb_002304_040 Hb_072922_010--Hb_002304_040 Hb_005023_010 Hb_005023_010 Hb_072922_010--Hb_005023_010 Hb_004129_140 Hb_004129_140 Hb_072922_010--Hb_004129_140 Hb_000146_040 Hb_000146_040 Hb_072922_010--Hb_000146_040 Hb_006618_120 Hb_006618_120 Hb_000300_630--Hb_006618_120 Hb_004627_040 Hb_004627_040 Hb_000300_630--Hb_004627_040 Hb_000300_630--Hb_005023_010 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_000300_630--Hb_001633_130 Hb_001018_110--Hb_005023_010 Hb_001018_130 Hb_001018_130 Hb_001018_110--Hb_001018_130 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_003141_070 Hb_003141_070 Hb_002304_040--Hb_003141_070 Hb_002304_040--Hb_004129_140 Hb_002304_040--Hb_000300_630 Hb_001024_020 Hb_001024_020 Hb_002304_040--Hb_001024_020 Hb_001482_040 Hb_001482_040 Hb_002304_040--Hb_001482_040 Hb_002304_040--Hb_006618_120 Hb_090051_030 Hb_090051_030 Hb_005023_010--Hb_090051_030 Hb_005023_010--Hb_001018_130 Hb_005023_010--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_005023_010--Hb_000146_050 Hb_003529_030 Hb_003529_030 Hb_004129_140--Hb_003529_030 Hb_000062_540 Hb_000062_540 Hb_004129_140--Hb_000062_540 Hb_004129_140--Hb_000300_630 Hb_009661_030 Hb_009661_030 Hb_004129_140--Hb_009661_030 Hb_005504_050 Hb_005504_050 Hb_004129_140--Hb_005504_050 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000477_100 Hb_000477_100 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.8597 56.3955 58.624 216.593 75.3209 125.52
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.4634 88.7852 90.7929 35.6029 80.7054

CAGE analysis