Hb_000140_350

Information

Type -
Description -
Location Contig140: 340273-343014
Sequence    

Annotation

kegg
ID rcu:RCOM_1617170
description hypothetical protein
nr
ID XP_002511939.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M146
description UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 OS=Arabidopsis thaliana GN=MGP4 PE=2 SV=1
trembl
ID B9RE00
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1617170 PE=4 SV=1
Gene Ontology
ID GO:0016757
description udp-d-xylose:l-fucose alpha- -d-xylosyltransferase mgp4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10856: 334456-339337 , PASA_asmbl_10859: 340539-342994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000146_040 0.056866387 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
3 Hb_000836_280 0.0671396542 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
4 Hb_000208_280 0.0757223881 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
5 Hb_004102_170 0.0782046834 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
6 Hb_000130_180 0.0797543766 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
7 Hb_000477_100 0.0837064595 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
8 Hb_001014_210 0.0854774743 - - CYP51 [Hevea brasiliensis]
9 Hb_033286_010 0.087562559 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
10 Hb_001258_110 0.090995522 - - transporter, putative [Ricinus communis]
11 Hb_001440_020 0.092715586 - - exocyst componenet sec8, putative [Ricinus communis]
12 Hb_002728_080 0.0928952651 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_007286_020 0.093796659 - - hypothetical protein L484_010675 [Morus notabilis]
14 Hb_012114_100 0.095799738 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_003097_140 0.0958660278 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
16 Hb_004531_120 0.0959659023 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
17 Hb_003617_020 0.0966163258 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
18 Hb_000260_600 0.0972292744 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012651_010 0.0982218336 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
20 Hb_000161_040 0.0987983993 - - PREDICTED: protein EI24 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000140_350 Hb_000140_350 Hb_000146_040 Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000836_280 Hb_000836_280 Hb_000140_350--Hb_000836_280 Hb_000208_280 Hb_000208_280 Hb_000140_350--Hb_000208_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_000146_040--Hb_004102_170 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010 Hb_000836_280--Hb_000208_280 Hb_013057_020 Hb_013057_020 Hb_000836_280--Hb_013057_020 Hb_023344_150 Hb_023344_150 Hb_000836_280--Hb_023344_150 Hb_012114_100 Hb_012114_100 Hb_000836_280--Hb_012114_100 Hb_000836_280--Hb_000146_040 Hb_000487_270 Hb_000487_270 Hb_000208_280--Hb_000487_270 Hb_000192_080 Hb_000192_080 Hb_000208_280--Hb_000192_080 Hb_000208_280--Hb_012114_100 Hb_001679_050 Hb_001679_050 Hb_000208_280--Hb_001679_050 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_000049_020 Hb_000049_020 Hb_004102_170--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_004102_170--Hb_000345_160 Hb_001405_210 Hb_001405_210 Hb_004102_170--Hb_001405_210 Hb_004102_170--Hb_005797_010 Hb_001258_110 Hb_001258_110 Hb_000130_180--Hb_001258_110 Hb_001821_150 Hb_001821_150 Hb_000130_180--Hb_001821_150 Hb_001014_210 Hb_001014_210 Hb_000130_180--Hb_001014_210 Hb_002284_250 Hb_002284_250 Hb_000130_180--Hb_002284_250 Hb_004531_120 Hb_004531_120 Hb_000130_180--Hb_004531_120 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91868 5.35396 3.39026 11.7037 5.25724 5.17586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96065 3.95407 4.31035 4.94635 4.34652

CAGE analysis