Hb_000836_280

Information

Type -
Description -
Location Contig836: 210052-211110
Sequence    

Annotation

kegg
ID rcu:RCOM_1616310
description hypothetical protein
nr
ID XP_012083325.1
description PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LMM6
description Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1
trembl
ID B9RDW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1616310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59936: 209824-212198 , PASA_asmbl_59937: 209107-210301 , PASA_asmbl_59938: 208914-210241
cDNA
(Sanger)
(ID:Location)		 004_F04.ab1: 210400-212143 , 010_H10.ab1: 210542-212159 , 010_N07.ab1: 210451-212147 , 020_E12.ab1: 210421-212154 , 022_J10.ab1: 210485-212154 , 026_D01.ab1: 210550-212154 , 030_M16.ab1: 210443-212143 , 032_I13.ab1: 209868-210197 , 050_E22.ab1: 210467-212154 , 051_L05.ab1: 209868-210197 , 052_H22.ab1: 209868-210197 , 053_O21.ab1: 210446-212154

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_280 0.0 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
2 Hb_000140_350 0.0671396542 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000208_280 0.077741211 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
4 Hb_013057_020 0.0869248545 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
5 Hb_023344_150 0.0933469499 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
6 Hb_012114_100 0.0943085223 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
7 Hb_000146_040 0.0962883656 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
8 Hb_004102_170 0.0965320221 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
9 Hb_000258_240 0.1000328376 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_007286_020 0.1004615822 - - hypothetical protein L484_010675 [Morus notabilis]
11 Hb_000984_310 0.1027811022 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
12 Hb_005504_050 0.1041215723 - - putative protein [Arabidopsis thaliana]
13 Hb_000477_100 0.1052878463 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
14 Hb_000329_230 0.1082022868 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
15 Hb_006452_120 0.1082086068 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_017387_010 0.1085782582 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
17 Hb_000487_270 0.1087609085 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
18 Hb_000983_050 0.1094283866 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_002781_030 0.1096758364 - - protein binding protein, putative [Ricinus communis]
20 Hb_000962_030 0.1106021285 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_280 Hb_000836_280 Hb_000140_350 Hb_000140_350 Hb_000836_280--Hb_000140_350 Hb_000208_280 Hb_000208_280 Hb_000836_280--Hb_000208_280 Hb_013057_020 Hb_013057_020 Hb_000836_280--Hb_013057_020 Hb_023344_150 Hb_023344_150 Hb_000836_280--Hb_023344_150 Hb_012114_100 Hb_012114_100 Hb_000836_280--Hb_012114_100 Hb_000146_040 Hb_000146_040 Hb_000836_280--Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000140_350--Hb_000208_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100 Hb_000487_270 Hb_000487_270 Hb_000208_280--Hb_000487_270 Hb_000192_080 Hb_000192_080 Hb_000208_280--Hb_000192_080 Hb_000208_280--Hb_012114_100 Hb_001679_050 Hb_001679_050 Hb_000208_280--Hb_001679_050 Hb_006441_020 Hb_006441_020 Hb_013057_020--Hb_006441_020 Hb_000983_050 Hb_000983_050 Hb_013057_020--Hb_000983_050 Hb_013057_020--Hb_023344_150 Hb_002781_030 Hb_002781_030 Hb_013057_020--Hb_002781_030 Hb_004480_020 Hb_004480_020 Hb_013057_020--Hb_004480_020 Hb_023344_150--Hb_000983_050 Hb_000731_200 Hb_000731_200 Hb_023344_150--Hb_000731_200 Hb_001328_080 Hb_001328_080 Hb_023344_150--Hb_001328_080 Hb_000023_300 Hb_000023_300 Hb_023344_150--Hb_000023_300 Hb_008748_030 Hb_008748_030 Hb_023344_150--Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_023344_150--Hb_000227_160 Hb_012518_070 Hb_012518_070 Hb_012114_100--Hb_012518_070 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_001440_020 Hb_001440_020 Hb_012114_100--Hb_001440_020 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012055_040 Hb_012055_040 Hb_012114_100--Hb_012055_040 Hb_003498_080 Hb_003498_080 Hb_012114_100--Hb_003498_080 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_000146_040--Hb_004102_170 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.4344 175.401 93.1431 350.613 94.7723 155.041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.376 130.327 116.538 134.386 128.956

CAGE analysis