Hb_004480_020

Information

Type -
Description -
Location Contig4480: 17559-19036
Sequence    

Annotation

kegg
ID rcu:RCOM_1721330
description hypothetical protein
nr
ID XP_012075967.1
description PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11059 PE=4 SV=1
Gene Ontology
ID GO:0005886
description keratin-associated protein 10-6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43098: 17569-18972
cDNA
(Sanger)
(ID:Location)		 008_K04.ab1: 17782-18878 , 017_L24.ab1: 17742-18878

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004480_020 0.0 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
2 Hb_001481_150 0.0863456751 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
3 Hb_007286_020 0.0941869503 - - hypothetical protein L484_010675 [Morus notabilis]
4 Hb_007137_050 0.0942703055 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_000023_300 0.0946772076 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_000085_450 0.1014419601 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
7 Hb_001097_040 0.1027370263 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
8 Hb_000679_100 0.1031978853 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
9 Hb_013057_020 0.1032322852 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
10 Hb_015026_130 0.104853298 - - quinone oxidoreductase, putative [Ricinus communis]
11 Hb_000165_080 0.1101410875 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
12 Hb_001051_070 0.1105062233 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
13 Hb_006006_040 0.1113392554 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
14 Hb_000622_110 0.1113950668 - - cmp-sialic acid transporter, putative [Ricinus communis]
15 Hb_005215_020 0.1132733927 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
16 Hb_002781_030 0.1148253995 - - protein binding protein, putative [Ricinus communis]
17 Hb_012651_010 0.1150367232 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
18 Hb_001825_040 0.1152890734 - - myosin XI, putative [Ricinus communis]
19 Hb_000983_050 0.1168123054 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_023344_150 0.1178545336 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]

Gene co-expression network

sample Hb_004480_020 Hb_004480_020 Hb_001481_150 Hb_001481_150 Hb_004480_020--Hb_001481_150 Hb_007286_020 Hb_007286_020 Hb_004480_020--Hb_007286_020 Hb_007137_050 Hb_007137_050 Hb_004480_020--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_004480_020--Hb_000023_300 Hb_000085_450 Hb_000085_450 Hb_004480_020--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_004480_020--Hb_001097_040 Hb_000928_190 Hb_000928_190 Hb_001481_150--Hb_000928_190 Hb_033152_070 Hb_033152_070 Hb_001481_150--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_001481_150--Hb_004525_040 Hb_019280_020 Hb_019280_020 Hb_001481_150--Hb_019280_020 Hb_001006_270 Hb_001006_270 Hb_001481_150--Hb_001006_270 Hb_001051_070 Hb_001051_070 Hb_007286_020--Hb_001051_070 Hb_004102_170 Hb_004102_170 Hb_007286_020--Hb_004102_170 Hb_086639_080 Hb_086639_080 Hb_007286_020--Hb_086639_080 Hb_010042_030 Hb_010042_030 Hb_007286_020--Hb_010042_030 Hb_000679_100 Hb_000679_100 Hb_007286_020--Hb_000679_100 Hb_002486_050 Hb_002486_050 Hb_007286_020--Hb_002486_050 Hb_188063_050 Hb_188063_050 Hb_007137_050--Hb_188063_050 Hb_007137_050--Hb_000085_450 Hb_007137_050--Hb_001097_040 Hb_007137_050--Hb_010042_030 Hb_002740_090 Hb_002740_090 Hb_007137_050--Hb_002740_090 Hb_000579_130 Hb_000579_130 Hb_007137_050--Hb_000579_130 Hb_012262_030 Hb_012262_030 Hb_000023_300--Hb_012262_030 Hb_000227_160 Hb_000227_160 Hb_000023_300--Hb_000227_160 Hb_000023_300--Hb_001097_040 Hb_000023_300--Hb_001051_070 Hb_010672_020 Hb_010672_020 Hb_000023_300--Hb_010672_020 Hb_008748_030 Hb_008748_030 Hb_000023_300--Hb_008748_030 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000089_180 Hb_000089_180 Hb_000085_450--Hb_000089_180 Hb_003020_100 Hb_003020_100 Hb_000085_450--Hb_003020_100 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7673 36.7601 26.6753 83.279 17.2479 17.2943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1743 20.1821 14.9123 37.7155 20.7822

CAGE analysis