Hb_002781_030

Information

Type -
Description -
Location Contig2781: 33857-38365
Sequence    

Annotation

kegg
ID rcu:RCOM_1720390
description protein binding protein, putative
nr
ID XP_002521098.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9FKB6
description BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=2 SV=1
trembl
ID B9S529
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1720390 PE=4 SV=1
Gene Ontology
ID GO:0005886
description btb poz domain-containing protein at5g48800

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29022: 33921-36186 , PASA_asmbl_29023: 34188-34340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002781_030 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000258_240 0.0603115989 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
3 Hb_000928_190 0.0855100358 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
4 Hb_000359_090 0.0913917047 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
5 Hb_148130_020 0.0989908202 - - -
6 Hb_013057_020 0.1028039554 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
7 Hb_001481_150 0.1031191379 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
8 Hb_033152_070 0.1057726647 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
9 Hb_000429_050 0.1077280707 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
10 Hb_000836_280 0.1096758364 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
11 Hb_000402_130 0.1109210013 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
12 Hb_003988_050 0.1115271559 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
13 Hb_000984_310 0.1122906866 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
14 Hb_002133_020 0.1129117977 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003052_180 0.1147073924 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
16 Hb_004480_020 0.1148253995 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
17 Hb_000023_300 0.1183533176 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_007286_020 0.1198945682 - - hypothetical protein L484_010675 [Morus notabilis]
19 Hb_000025_190 0.1206703316 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
20 Hb_003529_030 0.1210299563 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002781_030 Hb_002781_030 Hb_000258_240 Hb_000258_240 Hb_002781_030--Hb_000258_240 Hb_000928_190 Hb_000928_190 Hb_002781_030--Hb_000928_190 Hb_000359_090 Hb_000359_090 Hb_002781_030--Hb_000359_090 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_003988_050 Hb_003988_050 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_033152_070 Hb_033152_070 Hb_000928_190--Hb_033152_070 Hb_010042_020 Hb_010042_020 Hb_000928_190--Hb_010042_020 Hb_000928_190--Hb_001481_150 Hb_000928_190--Hb_003988_050 Hb_000429_050 Hb_000429_050 Hb_000359_090--Hb_000429_050 Hb_000359_090--Hb_000258_240 Hb_000384_070 Hb_000384_070 Hb_000359_090--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_000359_090--Hb_002133_020 Hb_004032_030 Hb_004032_030 Hb_000359_090--Hb_004032_030 Hb_148130_020--Hb_010042_020 Hb_148130_020--Hb_033152_070 Hb_148130_020--Hb_000928_190 Hb_148130_020--Hb_000258_240 Hb_000008_190 Hb_000008_190 Hb_148130_020--Hb_000008_190 Hb_000836_280 Hb_000836_280 Hb_013057_020--Hb_000836_280 Hb_006441_020 Hb_006441_020 Hb_013057_020--Hb_006441_020 Hb_000983_050 Hb_000983_050 Hb_013057_020--Hb_000983_050 Hb_023344_150 Hb_023344_150 Hb_013057_020--Hb_023344_150 Hb_004480_020 Hb_004480_020 Hb_013057_020--Hb_004480_020 Hb_001481_150--Hb_004480_020 Hb_001481_150--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_001481_150--Hb_004525_040 Hb_019280_020 Hb_019280_020 Hb_001481_150--Hb_019280_020 Hb_001006_270 Hb_001006_270 Hb_001481_150--Hb_001006_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26442 3.13863 1.96302 11.5779 1.69277 3.025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8021 3.66952 3.17443 5.18918 2.93776

CAGE analysis