Hb_000022_050

Information

Type -
Description -
Location Contig22: 70795-78172
Sequence    

Annotation

kegg
ID mdm:103438339
description retinol dehydrogenase 12-like
nr
ID XP_006599712.1
description PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
swissprot
ID -
description -
trembl
ID K7MIZ6
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0016630
description retinol dehydrogenase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22603: 46241-78451 , PASA_asmbl_22605: 74470-74664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_050 0.0 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
2 Hb_000261_230 0.0606325196 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
3 Hb_005797_010 0.0799041168 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
4 Hb_000009_400 0.0844698494 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
5 Hb_012322_020 0.0950260983 - - -
6 Hb_001829_040 0.0977743444 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
7 Hb_003929_170 0.0994832786 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
8 Hb_002739_020 0.1007989757 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
9 Hb_000096_120 0.1037034492 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
10 Hb_005460_050 0.1051504521 - - COR413-PM2, putative [Ricinus communis]
11 Hb_000139_530 0.1056098716 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000696_010 0.1061497932 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
13 Hb_003038_120 0.1064340131 - - rer1 protein, putative [Ricinus communis]
14 Hb_000207_150 0.1067935346 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
15 Hb_001227_130 0.1070779969 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
16 Hb_000120_170 0.1079353152 - - selenoprotein [Populus trichocarpa]
17 Hb_006588_170 0.1087197631 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
18 Hb_002828_020 0.1110616106 - - protein binding protein, putative [Ricinus communis]
19 Hb_003549_150 0.1114273076 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
20 Hb_032990_010 0.1117418114 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000022_050 Hb_000022_050 Hb_000261_230 Hb_000261_230 Hb_000022_050--Hb_000261_230 Hb_005797_010 Hb_005797_010 Hb_000022_050--Hb_005797_010 Hb_000009_400 Hb_000009_400 Hb_000022_050--Hb_000009_400 Hb_012322_020 Hb_012322_020 Hb_000022_050--Hb_012322_020 Hb_001829_040 Hb_001829_040 Hb_000022_050--Hb_001829_040 Hb_003929_170 Hb_003929_170 Hb_000022_050--Hb_003929_170 Hb_003897_040 Hb_003897_040 Hb_000261_230--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000261_230--Hb_032990_010 Hb_005460_050 Hb_005460_050 Hb_000261_230--Hb_005460_050 Hb_000261_230--Hb_005797_010 Hb_002739_020 Hb_002739_020 Hb_000261_230--Hb_002739_020 Hb_007481_010 Hb_007481_010 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_004102_170 Hb_004102_170 Hb_005797_010--Hb_004102_170 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_005797_010--Hb_000009_400 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_000009_400--Hb_003929_170 Hb_000009_400--Hb_012322_020 Hb_000146_050 Hb_000146_050 Hb_012322_020--Hb_000146_050 Hb_001051_080 Hb_001051_080 Hb_012322_020--Hb_001051_080 Hb_001635_160 Hb_001635_160 Hb_012322_020--Hb_001635_160 Hb_172632_120 Hb_172632_120 Hb_012322_020--Hb_172632_120 Hb_002235_210 Hb_002235_210 Hb_012322_020--Hb_002235_210 Hb_011671_480 Hb_011671_480 Hb_001829_040--Hb_011671_480 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_000260_720 Hb_000260_720 Hb_001829_040--Hb_000260_720 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_001829_040--Hb_000261_230 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250 Hb_000107_230 Hb_000107_230 Hb_003929_170--Hb_000107_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.69313 8.97496 10.1975 20.2874 9.1496 11.9375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5953 7.42468 4.83922 7.94372 4.70303

CAGE analysis