Hb_000260_720

Information

Type -
Description -
Location Contig260: 550688-551279
Sequence    

Annotation

kegg
ID rcu:RCOM_1324490
description ADP-ribosylation factor, arf, putative
nr
ID XP_009617967.1
description PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
swissprot
ID P91924
description ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3
trembl
ID A0A067JP61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00572 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor 1-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27058: 550641-556653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_720 0.0 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
2 Hb_001829_040 0.1016277029 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
3 Hb_011671_480 0.1083556756 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003342_020 0.1116004469 - - calcineurin B, putative [Ricinus communis]
5 Hb_005535_080 0.112130134 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
6 Hb_004055_120 0.1142101435 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
7 Hb_000107_230 0.1153496587 - - unknown [Medicago truncatula]
8 Hb_000152_600 0.1154848978 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
9 Hb_000331_090 0.1185558043 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
10 Hb_000617_010 0.1211216467 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
11 Hb_003929_170 0.1226888328 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
12 Hb_001677_200 0.1233834341 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004102_170 0.125466412 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
14 Hb_007390_020 0.1281436617 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
15 Hb_019181_030 0.128473821 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
16 Hb_000207_150 0.1291948779 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
17 Hb_081599_010 0.1292778299 - - conserved hypothetical protein [Ricinus communis]
18 Hb_072922_010 0.1296053852 - - apolipoprotein d, putative [Ricinus communis]
19 Hb_002157_120 0.1303341271 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000172_510 0.1303991594 - - hypothetical protein B456_007G243100 [Gossypium raimondii]

Gene co-expression network

sample Hb_000260_720 Hb_000260_720 Hb_001829_040 Hb_001829_040 Hb_000260_720--Hb_001829_040 Hb_011671_480 Hb_011671_480 Hb_000260_720--Hb_011671_480 Hb_003342_020 Hb_003342_020 Hb_000260_720--Hb_003342_020 Hb_005535_080 Hb_005535_080 Hb_000260_720--Hb_005535_080 Hb_004055_120 Hb_004055_120 Hb_000260_720--Hb_004055_120 Hb_000107_230 Hb_000107_230 Hb_000260_720--Hb_000107_230 Hb_001829_040--Hb_011671_480 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_000538_240 Hb_000538_240 Hb_011671_480--Hb_000538_240 Hb_001911_040 Hb_001911_040 Hb_011671_480--Hb_001911_040 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_007597_010 Hb_007597_010 Hb_003342_020--Hb_007597_010 Hb_003929_070 Hb_003929_070 Hb_003342_020--Hb_003929_070 Hb_000322_070 Hb_000322_070 Hb_003342_020--Hb_000322_070 Hb_000692_150 Hb_000692_150 Hb_003342_020--Hb_000692_150 Hb_001405_210 Hb_001405_210 Hb_003342_020--Hb_001405_210 Hb_003209_130 Hb_003209_130 Hb_005535_080--Hb_003209_130 Hb_005381_020 Hb_005381_020 Hb_005535_080--Hb_005381_020 Hb_002486_050 Hb_002486_050 Hb_005535_080--Hb_002486_050 Hb_000395_040 Hb_000395_040 Hb_005535_080--Hb_000395_040 Hb_000622_110 Hb_000622_110 Hb_005535_080--Hb_000622_110 Hb_007919_110 Hb_007919_110 Hb_005535_080--Hb_007919_110 Hb_000256_150 Hb_000256_150 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_000197_020 Hb_000197_020 Hb_004055_120--Hb_000197_020 Hb_000917_130 Hb_000917_130 Hb_004055_120--Hb_000917_130 Hb_003998_040 Hb_003998_040 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0073 25.5996 42.2735 69.3417 17.1915 42.2285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9099 32.1426 18.534 15.8144 26.1574

CAGE analysis