Hb_000692_150

Information

Type -
Description -
Location Contig692: 131075-134040
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26660g
description POPTRDRAFT_801579; oxidoreductase family protein
nr
ID XP_012073723.1
description PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
swissprot
ID Q9LN20
description Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana GN=P4H3 PE=2 SV=1
trembl
ID A0A067KYE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08165 PE=4 SV=1
Gene Ontology
ID GO:0005739
description probable prolyl 4-hydroxylase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54449: 114019-134023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_150 0.0 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
2 Hb_009252_050 0.0836208131 - - protein binding protein, putative [Ricinus communis]
3 Hb_008226_090 0.0842309479 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
4 Hb_005946_210 0.0865259819 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
5 Hb_134362_010 0.0878042111 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
6 Hb_004109_230 0.0883979036 - - heat shock protein binding protein, putative [Ricinus communis]
7 Hb_044486_020 0.0917989524 - - CASTOR protein [Glycine max]
8 Hb_000664_110 0.0922823528 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
9 Hb_000009_500 0.0936518287 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
10 Hb_007597_010 0.0966815684 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
11 Hb_000322_070 0.0983128956 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
12 Hb_162060_010 0.0989078874 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008253_020 0.0992201964 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
14 Hb_011849_040 0.0992341288 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000139_130 0.0996656372 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
16 Hb_001405_210 0.0998360697 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
17 Hb_000237_140 0.1010497829 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
18 Hb_001033_050 0.1031428265 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
19 Hb_000161_040 0.1031643029 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
20 Hb_000261_240 0.1032878232 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]

Gene co-expression network

sample Hb_000692_150 Hb_000692_150 Hb_009252_050 Hb_009252_050 Hb_000692_150--Hb_009252_050 Hb_008226_090 Hb_008226_090 Hb_000692_150--Hb_008226_090 Hb_005946_210 Hb_005946_210 Hb_000692_150--Hb_005946_210 Hb_134362_010 Hb_134362_010 Hb_000692_150--Hb_134362_010 Hb_004109_230 Hb_004109_230 Hb_000692_150--Hb_004109_230 Hb_044486_020 Hb_044486_020 Hb_000692_150--Hb_044486_020 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_009252_050--Hb_134362_010 Hb_004429_010 Hb_004429_010 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_005723_020 Hb_005723_020 Hb_008226_090--Hb_005723_020 Hb_002014_040 Hb_002014_040 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_103747_020 Hb_103747_020 Hb_008226_090--Hb_103747_020 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040 Hb_010272_010 Hb_010272_010 Hb_005946_210--Hb_010272_010 Hb_000664_110 Hb_000664_110 Hb_005946_210--Hb_000664_110 Hb_001109_060 Hb_001109_060 Hb_005946_210--Hb_001109_060 Hb_005946_210--Hb_008226_090 Hb_012215_010 Hb_012215_010 Hb_005946_210--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_005946_210--Hb_002539_110 Hb_001668_010 Hb_001668_010 Hb_134362_010--Hb_001668_010 Hb_001673_050 Hb_001673_050 Hb_134362_010--Hb_001673_050 Hb_002849_170 Hb_002849_170 Hb_134362_010--Hb_002849_170 Hb_000352_070 Hb_000352_070 Hb_134362_010--Hb_000352_070 Hb_134362_010--Hb_004429_010 Hb_000009_500 Hb_000009_500 Hb_004109_230--Hb_000009_500 Hb_000139_130 Hb_000139_130 Hb_004109_230--Hb_000139_130 Hb_028512_020 Hb_028512_020 Hb_004109_230--Hb_028512_020 Hb_003943_010 Hb_003943_010 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_011849_040 Hb_011849_040 Hb_004109_230--Hb_011849_040 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_000020_160 Hb_000020_160 Hb_044486_020--Hb_000020_160 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.3124 17.9801 11.8874 22.6605 17.288 15.0972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.18953 9.23613 5.98463 10.9039 10.7535

CAGE analysis