Hb_003342_020

Information

Type -
Description -
Location Contig3342: 41488-45857
Sequence    

Annotation

kegg
ID rcu:RCOM_0104820
description calcineurin B, putative
nr
ID XP_002532178.1
description calcineurin B, putative [Ricinus communis]
swissprot
ID Q8LEM7
description Calcineurin B-like protein 3 OS=Arabidopsis thaliana GN=CBL3 PE=1 SV=2
trembl
ID B9T1Q9
description Calcineurin B, putative OS=Ricinus communis GN=RCOM_0104820 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcineurin b-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35064: 41810-45703 , PASA_asmbl_35065: 45198-45594 , PASA_asmbl_35066: 41551-45702 , PASA_asmbl_35067: 42410-45731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003342_020 0.0 - - calcineurin B, putative [Ricinus communis]
2 Hb_007597_010 0.094160063 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
3 Hb_003929_070 0.094236048 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
4 Hb_000322_070 0.1045487207 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
5 Hb_000692_150 0.1107331901 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
6 Hb_000260_720 0.1116004469 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
7 Hb_001405_210 0.1152182078 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
8 Hb_000454_130 0.1162283385 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
9 Hb_005946_210 0.1177362672 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
10 Hb_033286_010 0.1180019142 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
11 Hb_000258_070 0.1180363143 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
12 Hb_001922_150 0.1187963377 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
13 Hb_011249_070 0.1188094128 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
14 Hb_002983_080 0.1191270903 - - acetylornithine aminotransferase, partial [Prunus persica]
15 Hb_007248_030 0.1195806856 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
16 Hb_000617_010 0.1202871256 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
17 Hb_162060_010 0.1207974315 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000331_090 0.1212838426 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
19 Hb_010137_060 0.121625011 - - PREDICTED: uncharacterized protein LOC105634409 [Jatropha curcas]
20 Hb_012395_170 0.1225507135 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003342_020 Hb_003342_020 Hb_007597_010 Hb_007597_010 Hb_003342_020--Hb_007597_010 Hb_003929_070 Hb_003929_070 Hb_003342_020--Hb_003929_070 Hb_000322_070 Hb_000322_070 Hb_003342_020--Hb_000322_070 Hb_000692_150 Hb_000692_150 Hb_003342_020--Hb_000692_150 Hb_000260_720 Hb_000260_720 Hb_003342_020--Hb_000260_720 Hb_001405_210 Hb_001405_210 Hb_003342_020--Hb_001405_210 Hb_007597_010--Hb_003929_070 Hb_000336_020 Hb_000336_020 Hb_007597_010--Hb_000336_020 Hb_001677_200 Hb_001677_200 Hb_007597_010--Hb_001677_200 Hb_007248_030 Hb_007248_030 Hb_007597_010--Hb_007248_030 Hb_044486_020 Hb_044486_020 Hb_007597_010--Hb_044486_020 Hb_002326_040 Hb_002326_040 Hb_007597_010--Hb_002326_040 Hb_001259_050 Hb_001259_050 Hb_003929_070--Hb_001259_050 Hb_012395_170 Hb_012395_170 Hb_003929_070--Hb_012395_170 Hb_002413_010 Hb_002413_010 Hb_003929_070--Hb_002413_010 Hb_000258_070 Hb_000258_070 Hb_003929_070--Hb_000258_070 Hb_000300_270 Hb_000300_270 Hb_003929_070--Hb_000300_270 Hb_000009_400 Hb_000009_400 Hb_000322_070--Hb_000009_400 Hb_000046_570 Hb_000046_570 Hb_000322_070--Hb_000046_570 Hb_162060_010 Hb_162060_010 Hb_000322_070--Hb_162060_010 Hb_003617_020 Hb_003617_020 Hb_000322_070--Hb_003617_020 Hb_008253_020 Hb_008253_020 Hb_000322_070--Hb_008253_020 Hb_000390_250 Hb_000390_250 Hb_000322_070--Hb_000390_250 Hb_009252_050 Hb_009252_050 Hb_000692_150--Hb_009252_050 Hb_008226_090 Hb_008226_090 Hb_000692_150--Hb_008226_090 Hb_005946_210 Hb_005946_210 Hb_000692_150--Hb_005946_210 Hb_134362_010 Hb_134362_010 Hb_000692_150--Hb_134362_010 Hb_004109_230 Hb_004109_230 Hb_000692_150--Hb_004109_230 Hb_000692_150--Hb_044486_020 Hb_001829_040 Hb_001829_040 Hb_000260_720--Hb_001829_040 Hb_011671_480 Hb_011671_480 Hb_000260_720--Hb_011671_480 Hb_005535_080 Hb_005535_080 Hb_000260_720--Hb_005535_080 Hb_004055_120 Hb_004055_120 Hb_000260_720--Hb_004055_120 Hb_000107_230 Hb_000107_230 Hb_000260_720--Hb_000107_230 Hb_001405_210--Hb_007248_030 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.91547 18.1954 15.7039 27.9403 15.0433 21.1124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71704 19.6942 9.27252 9.45553 15.2646

CAGE analysis