Hb_001259_050

Information

Type -
Description -
Location Contig1259: 53535-66322
Sequence    

Annotation

kegg
ID rcu:RCOM_0003690
description calcium lipid binding protein, putative
nr
ID XP_002530768.1
description calcium lipid binding protein, putative [Ricinus communis]
swissprot
ID Q8L706
description Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1
trembl
ID B9SXP9
description Calcium lipid binding protein, putative OS=Ricinus communis GN=RCOM_0003690 PE=4 SV=1
Gene Ontology
ID GO:0005783
description synaptotagmin-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07911: 53655-57339 , PASA_asmbl_07915: 63075-63240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001259_050 0.0 - - calcium lipid binding protein, putative [Ricinus communis]
2 Hb_008279_040 0.0411421109 - - Rer1 family protein isoform 2 [Theobroma cacao]
3 Hb_003607_130 0.0626428235 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000029_060 0.0691166706 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
5 Hb_033006_030 0.0744744076 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
6 Hb_000347_250 0.0757449631 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
7 Hb_000567_230 0.0776368168 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
8 Hb_000487_270 0.0794665497 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
9 Hb_000340_530 0.0798415181 - - hypothetical protein VITISV_016664 [Vitis vinifera]
10 Hb_002830_010 0.079865368 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
11 Hb_001712_060 0.0801160034 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
12 Hb_000292_100 0.0801241527 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
13 Hb_000363_310 0.0802788973 - - DNA topoisomerase type I, putative [Ricinus communis]
14 Hb_003929_070 0.0811089936 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
15 Hb_003428_010 0.0814390039 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
16 Hb_002071_070 0.0816658604 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
17 Hb_000365_230 0.0818532897 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
18 Hb_001679_050 0.082297476 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
19 Hb_002849_130 0.082794889 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
20 Hb_000258_070 0.0832273247 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]

Gene co-expression network

sample Hb_001259_050 Hb_001259_050 Hb_008279_040 Hb_008279_040 Hb_001259_050--Hb_008279_040 Hb_003607_130 Hb_003607_130 Hb_001259_050--Hb_003607_130 Hb_000029_060 Hb_000029_060 Hb_001259_050--Hb_000029_060 Hb_033006_030 Hb_033006_030 Hb_001259_050--Hb_033006_030 Hb_000347_250 Hb_000347_250 Hb_001259_050--Hb_000347_250 Hb_000567_230 Hb_000567_230 Hb_001259_050--Hb_000567_230 Hb_008279_040--Hb_003607_130 Hb_000487_270 Hb_000487_270 Hb_008279_040--Hb_000487_270 Hb_010515_020 Hb_010515_020 Hb_008279_040--Hb_010515_020 Hb_001679_050 Hb_001679_050 Hb_008279_040--Hb_001679_050 Hb_002071_070 Hb_002071_070 Hb_008279_040--Hb_002071_070 Hb_000173_470 Hb_000173_470 Hb_003607_130--Hb_000173_470 Hb_005245_100 Hb_005245_100 Hb_003607_130--Hb_005245_100 Hb_001717_010 Hb_001717_010 Hb_003607_130--Hb_001717_010 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_004916_010 Hb_004916_010 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_001247_250 Hb_001247_250 Hb_033006_030--Hb_001247_250 Hb_000172_430 Hb_000172_430 Hb_033006_030--Hb_000172_430 Hb_000025_730 Hb_000025_730 Hb_033006_030--Hb_000025_730 Hb_002073_200 Hb_002073_200 Hb_033006_030--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_033006_030--Hb_003428_010 Hb_001902_030 Hb_001902_030 Hb_033006_030--Hb_001902_030 Hb_000292_100 Hb_000292_100 Hb_000347_250--Hb_000292_100 Hb_007472_070 Hb_007472_070 Hb_000347_250--Hb_007472_070 Hb_062226_130 Hb_062226_130 Hb_000347_250--Hb_062226_130 Hb_012022_040 Hb_012022_040 Hb_000347_250--Hb_012022_040 Hb_002849_130 Hb_002849_130 Hb_000347_250--Hb_002849_130 Hb_002042_050 Hb_002042_050 Hb_000567_230--Hb_002042_050 Hb_002272_030 Hb_002272_030 Hb_000567_230--Hb_002272_030 Hb_001817_170 Hb_001817_170 Hb_000567_230--Hb_001817_170 Hb_000703_190 Hb_000703_190 Hb_000567_230--Hb_000703_190 Hb_006100_020 Hb_006100_020 Hb_000567_230--Hb_006100_020 Hb_000139_080 Hb_000139_080 Hb_000567_230--Hb_000139_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1186 24.2819 20.0477 26.2214 18.1062 14.5726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.377 23.7153 21.4846 15.7715 25.8575

CAGE analysis