Hb_000173_470

Information

Type -
Description -
Location Contig173: 336841-338103
Sequence    

Annotation

kegg
ID pop:POPTR_0010s02980g
description hypothetical protein
nr
ID XP_012069477.1
description PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q5ZIK6
description BSD domain-containing protein 1 OS=Gallus gallus GN=BSDC1 PE=2 SV=1
trembl
ID A0A067KV93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16474: 336633-338145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_470 0.0 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
2 Hb_000465_300 0.0655991153 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
3 Hb_003607_130 0.074908273 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000753_230 0.0764286709 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
5 Hb_000749_050 0.0823000315 - - mitochondrial thioredoxin [Hevea brasiliensis]
6 Hb_023771_010 0.0826370516 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
7 Hb_000890_150 0.0837865169 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
8 Hb_000110_140 0.0864325401 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
9 Hb_000856_010 0.0880307795 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
10 Hb_000951_130 0.0889743882 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
11 Hb_000521_240 0.0902045892 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
12 Hb_000049_210 0.0911299455 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
13 Hb_019863_070 0.0941158047 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
14 Hb_002307_270 0.0948911964 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
15 Hb_000359_060 0.0956270423 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
16 Hb_000398_100 0.0965318017 - - Uncharacterized protein isoform 2 [Theobroma cacao]
17 Hb_011218_090 0.0972009781 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
18 Hb_012573_040 0.0978467118 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
19 Hb_002007_150 0.0984119223 - - -
20 Hb_001635_190 0.0990622478 - - RNA m5u methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000173_470 Hb_000173_470 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150 Hb_000465_300--Hb_000749_050 Hb_163256_020 Hb_163256_020 Hb_000465_300--Hb_163256_020 Hb_000723_230 Hb_000723_230 Hb_000465_300--Hb_000723_230 Hb_000465_300--Hb_000890_150 Hb_002045_070 Hb_002045_070 Hb_000465_300--Hb_002045_070 Hb_008279_040 Hb_008279_040 Hb_003607_130--Hb_008279_040 Hb_001259_050 Hb_001259_050 Hb_003607_130--Hb_001259_050 Hb_005245_100 Hb_005245_100 Hb_003607_130--Hb_005245_100 Hb_001717_010 Hb_001717_010 Hb_003607_130--Hb_001717_010 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_003688_180 Hb_003688_180 Hb_000753_230--Hb_003688_180 Hb_066920_030 Hb_066920_030 Hb_000753_230--Hb_066920_030 Hb_038574_010 Hb_038574_010 Hb_000753_230--Hb_038574_010 Hb_017387_010 Hb_017387_010 Hb_000753_230--Hb_017387_010 Hb_000753_230--Hb_020178_040 Hb_000749_050--Hb_002045_070 Hb_000749_050--Hb_000890_150 Hb_000215_320 Hb_000215_320 Hb_000749_050--Hb_000215_320 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090 Hb_010775_040 Hb_010775_040 Hb_023771_010--Hb_010775_040 Hb_000049_210 Hb_000049_210 Hb_023771_010--Hb_000049_210 Hb_019863_070 Hb_019863_070 Hb_023771_010--Hb_019863_070 Hb_023771_010--Hb_011218_090 Hb_002456_010 Hb_002456_010 Hb_023771_010--Hb_002456_010 Hb_000359_060 Hb_000359_060 Hb_000890_150--Hb_000359_060 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_000890_150--Hb_011218_090 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0158 36.8887 17.7305 31.7279 10.5167 12.2644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9186 32.6107 31.9774 23.6513 23.1196

CAGE analysis