Hb_000215_320

Information

Type -
Description -
Location Contig215: 247949-254299
Sequence    

Annotation

kegg
ID rcu:RCOM_1048820
description phosphofructokinase, putative (EC:2.7.1.11)
nr
ID AIE47276.1
description phosphofructokinase [Hevea brasiliensis]
swissprot
ID Q94AA4
description ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1
trembl
ID A0A068LLN8
description ATP-dependent 6-phosphofructokinase OS=Hevea brasiliensis GN=PFK7 PE=2 SV=1
Gene Ontology
ID GO:0003872
description atp-dependent 6-phosphofructokinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22208: 247910-253801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_320 0.0 - - phosphofructokinase [Hevea brasiliensis]
2 Hb_000890_150 0.0752223614 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
3 Hb_033594_080 0.0770571837 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
4 Hb_004117_110 0.0789018528 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
5 Hb_000538_230 0.0808032008 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
6 Hb_000749_050 0.0838728904 - - mitochondrial thioredoxin [Hevea brasiliensis]
7 Hb_017387_010 0.085187997 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
8 Hb_000359_060 0.0871533517 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
9 Hb_011218_090 0.0880866369 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
10 Hb_000983_050 0.0893778073 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_168978_010 0.0922189129 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
12 Hb_004108_220 0.0944851193 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
13 Hb_109484_010 0.096583289 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
14 Hb_001221_430 0.0977421235 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
15 Hb_000430_020 0.0985529021 - - -
16 Hb_002982_020 0.0996681288 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
17 Hb_000028_370 0.1002119489 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
18 Hb_003906_200 0.1006935533 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
19 Hb_002045_070 0.1007495832 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
20 Hb_000173_280 0.1007956089 - - Speckle-type POZ protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000215_320 Hb_000215_320 Hb_000890_150 Hb_000890_150 Hb_000215_320--Hb_000890_150 Hb_033594_080 Hb_033594_080 Hb_000215_320--Hb_033594_080 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000538_230 Hb_000538_230 Hb_000215_320--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_000359_060 Hb_000359_060 Hb_000890_150--Hb_000359_060 Hb_000890_150--Hb_033594_080 Hb_011218_090 Hb_011218_090 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_033594_080--Hb_000359_060 Hb_000220_100 Hb_000220_100 Hb_033594_080--Hb_000220_100 Hb_002045_070 Hb_002045_070 Hb_033594_080--Hb_002045_070 Hb_004108_220 Hb_004108_220 Hb_033594_080--Hb_004108_220 Hb_000028_370 Hb_000028_370 Hb_004117_110--Hb_000028_370 Hb_013738_020 Hb_013738_020 Hb_004117_110--Hb_013738_020 Hb_002026_210 Hb_002026_210 Hb_004117_110--Hb_002026_210 Hb_168978_010 Hb_168978_010 Hb_004117_110--Hb_168978_010 Hb_002110_080 Hb_002110_080 Hb_004117_110--Hb_002110_080 Hb_000430_020 Hb_000430_020 Hb_000538_230--Hb_000430_020 Hb_001159_110 Hb_001159_110 Hb_000538_230--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_000538_230--Hb_005074_030 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_000465_300 Hb_000465_300 Hb_000749_050--Hb_000465_300 Hb_000749_050--Hb_002045_070 Hb_000173_470 Hb_000173_470 Hb_000749_050--Hb_000173_470 Hb_000749_050--Hb_000890_150 Hb_000749_050--Hb_011218_090 Hb_006452_120 Hb_006452_120 Hb_017387_010--Hb_006452_120 Hb_001221_430 Hb_001221_430 Hb_017387_010--Hb_001221_430 Hb_003544_030 Hb_003544_030 Hb_017387_010--Hb_003544_030 Hb_000574_450 Hb_000574_450 Hb_017387_010--Hb_000574_450 Hb_001434_080 Hb_001434_080 Hb_017387_010--Hb_001434_080 Hb_000962_030 Hb_000962_030 Hb_017387_010--Hb_000962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0921 72.2981 36.7236 91.9207 30.3291 36.6239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.4646 64.3762 52.1928 63.5096 32.6851

CAGE analysis