Hb_003929_070

Information

Type -
Description -
Location Contig3929: 60679-64471
Sequence    

Annotation

kegg
ID cit:102613698
description CBL-interacting serine/threonine-protein kinase 1-like
nr
ID XP_007035996.1
description CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
swissprot
ID Q94C40
description CBL-interacting serine/threonine-protein kinase 17 OS=Arabidopsis thaliana GN=CIPK17 PE=1 SV=1
trembl
ID A0A061ERB5
description CBL-interacting serine/threonine-protein kinase 1 isoform 3 OS=Theobroma cacao GN=TCM_021498 PE=3 SV=1
Gene Ontology
ID GO:0004674
description cbl-interacting serine threonine-protein kinase 1 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39350: 61070-64469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_070 0.0 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
2 Hb_007597_010 0.0696250411 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
3 Hb_001259_050 0.0811089936 - - calcium lipid binding protein, putative [Ricinus communis]
4 Hb_012395_170 0.0856499046 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002413_010 0.0874426235 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000258_070 0.0878985958 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
7 Hb_000300_270 0.0881499905 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_084247_010 0.0886527807 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000454_130 0.0896444256 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
10 Hb_002849_130 0.0904885975 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
11 Hb_002110_080 0.0916479901 - - FH interacting protein 1 [Theobroma cacao]
12 Hb_000029_060 0.0919860665 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
13 Hb_000329_230 0.0921764315 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
14 Hb_001863_360 0.0922611283 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
15 Hb_001717_010 0.0924387011 - - F-box and wd40 domain protein, putative [Ricinus communis]
16 Hb_002572_020 0.0928104023 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
17 Hb_007248_030 0.0929294064 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
18 Hb_004607_090 0.0932470471 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
19 Hb_008279_040 0.0936560443 - - Rer1 family protein isoform 2 [Theobroma cacao]
20 Hb_000103_340 0.0939662639 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_070 Hb_003929_070 Hb_007597_010 Hb_007597_010 Hb_003929_070--Hb_007597_010 Hb_001259_050 Hb_001259_050 Hb_003929_070--Hb_001259_050 Hb_012395_170 Hb_012395_170 Hb_003929_070--Hb_012395_170 Hb_002413_010 Hb_002413_010 Hb_003929_070--Hb_002413_010 Hb_000258_070 Hb_000258_070 Hb_003929_070--Hb_000258_070 Hb_000300_270 Hb_000300_270 Hb_003929_070--Hb_000300_270 Hb_000336_020 Hb_000336_020 Hb_007597_010--Hb_000336_020 Hb_001677_200 Hb_001677_200 Hb_007597_010--Hb_001677_200 Hb_007248_030 Hb_007248_030 Hb_007597_010--Hb_007248_030 Hb_044486_020 Hb_044486_020 Hb_007597_010--Hb_044486_020 Hb_002326_040 Hb_002326_040 Hb_007597_010--Hb_002326_040 Hb_008279_040 Hb_008279_040 Hb_001259_050--Hb_008279_040 Hb_003607_130 Hb_003607_130 Hb_001259_050--Hb_003607_130 Hb_000029_060 Hb_000029_060 Hb_001259_050--Hb_000029_060 Hb_033006_030 Hb_033006_030 Hb_001259_050--Hb_033006_030 Hb_000347_250 Hb_000347_250 Hb_001259_050--Hb_000347_250 Hb_000567_230 Hb_000567_230 Hb_001259_050--Hb_000567_230 Hb_005276_060 Hb_005276_060 Hb_012395_170--Hb_005276_060 Hb_084247_010 Hb_084247_010 Hb_012395_170--Hb_084247_010 Hb_003617_020 Hb_003617_020 Hb_012395_170--Hb_003617_020 Hb_003929_170 Hb_003929_170 Hb_012395_170--Hb_003929_170 Hb_001124_010 Hb_001124_010 Hb_012395_170--Hb_001124_010 Hb_000390_250 Hb_000390_250 Hb_012395_170--Hb_000390_250 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_002572_020 Hb_002572_020 Hb_002413_010--Hb_002572_020 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040 Hb_000441_090 Hb_000441_090 Hb_000258_070--Hb_000441_090 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_002849_130 Hb_002849_130 Hb_000258_070--Hb_002849_130 Hb_000340_530 Hb_000340_530 Hb_000258_070--Hb_000340_530 Hb_000313_220 Hb_000313_220 Hb_000258_070--Hb_000313_220 Hb_000347_430 Hb_000347_430 Hb_000258_070--Hb_000347_430 Hb_000049_020 Hb_000049_020 Hb_000300_270--Hb_000049_020 Hb_002046_160 Hb_002046_160 Hb_000300_270--Hb_002046_160 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_002883_030 Hb_002883_030 Hb_000300_270--Hb_002883_030 Hb_004452_110 Hb_004452_110 Hb_000300_270--Hb_004452_110 Hb_000345_160 Hb_000345_160 Hb_000300_270--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0584 24.0312 20.9548 29.6347 16.1206 15.1861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6369 20.1069 13.625 9.78489 20.8574

CAGE analysis